Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33382 * 125.20468 * 2 1 4 4 C 1.38424 * 114.92191 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.53958 * 179.73043 * 4 3 2 6 6 C 1.52998 * 109.46993 * 265.02354 * 5 4 3 7 7 C 1.53007 * 109.46769 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46968 * 180.02562 * 7 6 5 9 9 O 1.21292 * 119.99794 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00021 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99975 * 0.02562 * 10 8 7 12 12 C 1.37098 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.08004 * 119.99849 * 24.40333 * 12 10 8 14 14 C 1.38953 * 120.00131 * 204.39441 * 12 10 8 15 15 N 1.31412 * 119.99980 * 12.64898 * 14 12 10 16 16 Si 1.86797 * 119.99890 * 192.64387 * 14 12 10 17 17 H 1.48502 * 109.47312 * 60.00238 * 16 14 12 18 18 H 1.48504 * 109.47119 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47250 * 299.99955 * 16 14 12 20 20 C 1.33388 * 114.91960 * 359.97438 * 4 3 2 21 21 C 1.50705 * 125.20194 * 179.97438 * 20 4 3 22 22 S 1.75881 * 109.59648 * 0.02562 * 20 4 3 23 23 H 1.09000 * 109.47109 * 90.00060 * 1 2 3 24 24 H 1.09000 * 109.47396 * 209.99867 * 1 2 3 25 25 H 1.08994 * 109.47117 * 329.99699 * 1 2 3 26 26 H 1.07997 * 122.53991 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47018 * 25.02530 * 5 4 3 28 28 H 1.09002 * 109.47226 * 145.02257 * 5 4 3 29 29 H 1.08997 * 109.46931 * 299.99751 * 6 5 4 30 30 H 1.08996 * 109.46802 * 60.00022 * 6 5 4 31 31 H 1.09000 * 109.47145 * 300.00117 * 7 6 5 32 32 H 1.08994 * 109.47096 * 59.99723 * 7 6 5 33 33 H 1.09002 * 109.47261 * 85.86424 * 11 10 8 34 34 H 1.09005 * 109.46917 * 205.85945 * 11 10 8 35 35 H 1.08995 * 109.46925 * 325.86170 * 11 10 8 36 36 H 0.96996 * 119.99734 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.47184 * 90.00187 * 21 20 4 38 38 H 1.08996 * 109.46938 * 210.00135 * 21 20 4 39 39 H 1.09004 * 109.46730 * 330.00405 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0006 5 6 4.6623 1.9481 -0.0053 6 6 5.1001 2.2301 -1.4440 7 6 6.1396 3.3527 -1.4500 8 6 6.5703 3.6309 -2.8670 9 8 6.0932 2.9936 -3.7821 10 7 7.4857 4.5878 -3.1176 11 6 8.0624 5.3572 -2.0123 12 6 7.8779 4.8405 -4.4067 13 1 7.2224 4.5936 -5.2288 14 6 9.1186 5.4145 -4.6556 15 7 10.0133 5.4875 -3.6958 16 14 9.5150 6.0822 -6.3545 17 1 8.5476 7.1535 -6.7034 18 1 10.8923 6.6374 -6.3593 19 1 9.4203 4.9858 -7.3518 20 6 3.9750 -0.4478 0.0016 21 6 5.3860 -0.9772 0.0018 22 16 2.5209 -1.4373 0.0011 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.8669 2.0894 -0.0004 27 1 4.2265 2.8497 0.4252 28 1 5.5272 1.6451 0.5849 29 1 5.5359 1.3285 -1.8744 30 1 4.2352 2.5330 -2.0341 31 1 5.7034 4.2542 -1.0196 32 1 7.0045 3.0502 -0.8596 33 1 8.9137 4.8166 -1.5986 34 1 8.3927 6.3289 -2.3795 35 1 7.3099 5.4985 -1.2365 36 1 10.8795 5.8878 -3.8696 37 1 5.7264 -1.1040 1.0295 38 1 5.4135 -1.9385 -0.5113 39 1 6.0387 -0.2719 -0.5127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084590309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -22.613233 kcal Electronic energy + Delta-G solvation = -19279.078791 eV Core-core repulsion = 16312.776686 eV Total energy + Delta-G solvation = -2966.302106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.92616 -38.25032 -34.83281 -34.08413 -32.49186 -31.50483 -29.64740 -27.84234 -26.10552 -24.65457 -24.07581 -22.31802 -20.84604 -18.68936 -18.13578 -17.09089 -16.79847 -15.83627 -15.22144 -14.81476 -14.49299 -14.29949 -13.98835 -13.75103 -13.43439 -13.26691 -12.97488 -12.75018 -12.43187 -12.24313 -11.96292 -11.73591 -11.52821 -11.42529 -11.26831 -11.11207 -11.02788 -10.92570 -10.78723 -10.49304 -10.36517 -10.28086 -10.10921 -8.95711 -8.42354 -8.32178 -8.19592 -7.59774 -6.27657 -3.83567 1.00122 1.60759 1.98554 2.73016 3.21728 3.26558 3.30918 3.98587 4.18579 4.70185 4.85946 4.97433 5.11180 5.15708 5.19634 5.32618 5.34622 5.43532 5.52698 5.60167 5.65765 5.68812 5.82966 5.86343 6.00300 6.01094 6.12446 6.16384 6.22430 6.43369 6.46695 6.59443 6.71752 6.82514 6.90038 7.23303 7.60862 8.20752 8.55280 9.25242 9.49568 10.06967 10.77518 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034374 B = 0.003084 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.380847 B = 9078.101126 C = 9194.524503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.186 4.186 3 C -0.126 4.126 4 C -0.095 4.095 5 C -0.062 4.062 6 C -0.091 4.091 7 C -0.129 4.129 8 C 0.447 3.553 9 O -0.591 6.591 10 N -0.451 5.451 11 C 0.113 3.887 12 C -0.307 4.307 13 H 0.096 0.904 14 C 0.029 3.971 15 N -0.885 5.885 16 Si 0.925 3.075 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.176 4.176 21 C -0.085 4.085 22 S 0.073 5.927 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.137 0.863 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 -8.421 12.041 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.303 4.303 3 C -0.156 4.156 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.170 4.170 8 C 0.235 3.765 9 O -0.476 6.476 10 N -0.170 5.170 11 C -0.031 4.031 12 C -0.435 4.435 13 H 0.114 0.886 14 C -0.173 4.173 15 N -0.524 5.524 16 Si 0.752 3.248 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.293 4.293 21 C -0.143 4.143 22 S 0.338 5.662 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.577 -10.213 11.609 19.931 hybrid contribution 0.714 1.949 -0.710 2.194 sum -11.863 -8.264 10.899 18.106 Atomic orbital electron populations 1.20298 0.88056 1.02806 1.02647 1.24313 0.99638 0.95598 1.10720 1.19979 0.92491 0.99200 1.03972 1.18831 0.94624 0.94150 1.03016 1.20410 0.96187 0.95287 0.98255 1.21221 0.98748 0.98693 0.94231 1.21548 0.99452 0.99248 0.96726 1.20170 0.84458 0.81765 0.90113 1.90506 1.59155 1.51171 1.46769 1.43597 1.36269 1.30057 1.07064 1.21450 0.95625 0.97962 0.88038 1.19600 1.00577 1.39401 0.83885 0.88641 1.25328 0.94783 0.98013 0.99198 1.69985 1.05660 1.43811 1.32976 0.86017 0.77264 0.79308 0.82206 1.19971 1.20989 1.19828 1.24203 0.98707 0.95739 1.10610 1.20376 0.90025 1.01458 1.02470 1.84049 0.97131 1.10030 1.75023 0.90863 0.91609 0.90676 0.84479 0.91154 0.91081 0.91439 0.91527 0.90703 0.90481 0.93138 0.90881 0.95604 0.92303 0.90973 0.91520 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.38 36.01 0.37 -0.29 16 2 C -0.19 -2.13 6.51 -36.01 -0.23 -2.36 16 3 C -0.13 -1.56 9.83 -41.21 -0.41 -1.97 16 4 C -0.09 -1.25 5.06 -106.25 -0.54 -1.79 16 5 C -0.06 -0.80 4.84 -27.88 -0.14 -0.93 16 6 C -0.09 -1.50 4.43 -26.73 -0.12 -1.62 16 7 C -0.13 -2.35 4.31 -27.88 -0.12 -2.47 16 8 C 0.45 11.06 7.63 -10.99 -0.08 10.98 16 9 O -0.59 -16.76 15.69 5.55 0.09 -16.67 16 10 N -0.45 -11.80 3.01 -122.19 -0.37 -12.17 16 11 C 0.11 2.55 8.44 59.85 0.51 3.05 16 12 C -0.31 -8.76 9.24 -14.93 -0.14 -8.90 16 13 H 0.10 2.85 7.45 -52.48 -0.39 2.46 16 14 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 15 N -0.88 -23.98 10.83 55.50 0.60 -23.38 16 16 Si 0.93 21.12 29.57 -169.99 -5.03 16.09 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.18 -2.24 6.50 -36.00 -0.23 -2.48 16 21 C -0.08 -0.94 9.79 36.01 0.35 -0.59 16 22 S 0.07 0.85 23.31 -107.50 -2.51 -1.66 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 29 H 0.07 1.22 7.24 -51.93 -0.38 0.84 16 30 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.07 1.21 7.41 -51.93 -0.38 0.82 16 32 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 33 H 0.05 1.16 7.83 -51.93 -0.41 0.75 16 34 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 35 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.00 6.50 -51.93 -0.34 0.66 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -32.00 334.48 -8.95 -40.95 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.92 Total: 0.47 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.86 Total: -8.66 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.23 Total: -35.55 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.09 Total: -16.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.00 -8.95 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084590309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.334 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds