Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33382 * 125.20468 * 2 1 4 4 C 1.38424 * 114.92191 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.53958 * 179.73043 * 4 3 2 6 6 C 1.52998 * 109.46993 * 265.02354 * 5 4 3 7 7 C 1.53007 * 109.46769 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46968 * 180.02562 * 7 6 5 9 9 O 1.21292 * 119.99794 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00021 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99975 * 0.02562 * 10 8 7 12 12 C 1.37098 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.08004 * 119.99849 * 24.40333 * 12 10 8 14 14 C 1.38953 * 120.00131 * 204.39441 * 12 10 8 15 15 N 1.31412 * 119.99980 * 12.64898 * 14 12 10 16 16 Si 1.86797 * 119.99890 * 192.64387 * 14 12 10 17 17 H 1.48502 * 109.47312 * 60.00238 * 16 14 12 18 18 H 1.48504 * 109.47119 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47250 * 299.99955 * 16 14 12 20 20 C 1.33388 * 114.91960 * 359.97438 * 4 3 2 21 21 C 1.50705 * 125.20194 * 179.97438 * 20 4 3 22 22 S 1.75881 * 109.59648 * 0.02562 * 20 4 3 23 23 H 1.09000 * 109.47109 * 90.00060 * 1 2 3 24 24 H 1.09000 * 109.47396 * 209.99867 * 1 2 3 25 25 H 1.08994 * 109.47117 * 329.99699 * 1 2 3 26 26 H 1.07997 * 122.53991 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47018 * 25.02530 * 5 4 3 28 28 H 1.09002 * 109.47226 * 145.02257 * 5 4 3 29 29 H 1.08997 * 109.46931 * 299.99751 * 6 5 4 30 30 H 1.08996 * 109.46802 * 60.00022 * 6 5 4 31 31 H 1.09000 * 109.47145 * 300.00117 * 7 6 5 32 32 H 1.08994 * 109.47096 * 59.99723 * 7 6 5 33 33 H 1.09002 * 109.47261 * 85.86424 * 11 10 8 34 34 H 1.09005 * 109.46917 * 205.85945 * 11 10 8 35 35 H 1.08995 * 109.46925 * 325.86170 * 11 10 8 36 36 H 0.96996 * 119.99734 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.47184 * 90.00187 * 21 20 4 38 38 H 1.08996 * 109.46938 * 210.00135 * 21 20 4 39 39 H 1.09004 * 109.46730 * 330.00405 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0006 5 6 4.6623 1.9481 -0.0053 6 6 5.1001 2.2301 -1.4440 7 6 6.1396 3.3527 -1.4500 8 6 6.5703 3.6309 -2.8670 9 8 6.0932 2.9936 -3.7821 10 7 7.4857 4.5878 -3.1176 11 6 8.0624 5.3572 -2.0123 12 6 7.8779 4.8405 -4.4067 13 1 7.2224 4.5936 -5.2288 14 6 9.1186 5.4145 -4.6556 15 7 10.0133 5.4875 -3.6958 16 14 9.5150 6.0822 -6.3545 17 1 8.5476 7.1535 -6.7034 18 1 10.8923 6.6374 -6.3593 19 1 9.4203 4.9858 -7.3518 20 6 3.9750 -0.4478 0.0016 21 6 5.3860 -0.9772 0.0018 22 16 2.5209 -1.4373 0.0011 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.8669 2.0894 -0.0004 27 1 4.2265 2.8497 0.4252 28 1 5.5272 1.6451 0.5849 29 1 5.5359 1.3285 -1.8744 30 1 4.2352 2.5330 -2.0341 31 1 5.7034 4.2542 -1.0196 32 1 7.0045 3.0502 -0.8596 33 1 8.9137 4.8166 -1.5986 34 1 8.3927 6.3289 -2.3795 35 1 7.3099 5.4985 -1.2365 36 1 10.8795 5.8878 -3.8696 37 1 5.7264 -1.1040 1.0295 38 1 5.4135 -1.9385 -0.5113 39 1 6.0387 -0.2719 -0.5127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084590309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -39.903697 kcal Electronic energy + Delta-G solvation = -19279.828562 eV Core-core repulsion = 16312.776686 eV Total energy + Delta-G solvation = -2967.051876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44783 -39.59507 -36.73525 -35.32996 -33.78563 -33.35066 -30.54467 -29.18084 -27.91371 -26.30599 -25.20311 -23.61644 -21.89600 -20.45185 -19.16529 -18.83978 -18.00128 -17.71508 -16.74596 -16.38722 -16.03503 -15.62723 -15.21831 -15.15850 -14.42609 -14.19435 -14.12331 -13.94181 -13.63256 -13.59588 -13.36148 -13.17391 -13.06015 -12.86629 -12.70642 -12.58521 -12.46032 -12.26141 -12.16741 -12.06258 -11.92968 -11.58952 -11.41284 -10.99117 -10.30783 -9.64349 -9.32055 -9.14474 -8.33498 -5.98486 0.08947 0.71953 1.07447 1.38756 1.39866 1.50611 1.78226 2.07634 2.29004 3.09424 3.14885 3.87842 3.95587 4.05385 4.14082 4.22309 4.37982 4.44818 4.55566 4.63781 4.69601 4.72484 4.73797 4.77898 4.79941 4.94514 4.94731 5.03706 5.07727 5.14998 5.21888 5.30021 5.39465 5.44522 5.48232 5.61183 5.72706 6.12495 6.51363 7.19053 7.50958 8.08046 8.69429 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034374 B = 0.003084 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.380847 B = 9078.101126 C = 9194.524503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.187 4.187 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.050 4.050 6 C -0.080 4.080 7 C -0.116 4.116 8 C 0.433 3.567 9 O -0.639 6.639 10 N -0.468 5.468 11 C 0.121 3.879 12 C -0.349 4.349 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.897 5.897 16 Si 0.987 3.013 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.278 1.278 20 C -0.193 4.193 21 C -0.085 4.085 22 S 0.077 5.923 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.273 0.727 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -7.975 13.474 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.304 4.304 3 C -0.175 4.175 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.156 4.156 8 C 0.223 3.777 9 O -0.527 6.527 10 N -0.187 5.187 11 C -0.022 4.022 12 C -0.477 4.477 13 H 0.085 0.915 14 C -0.204 4.204 15 N -0.535 5.535 16 Si 0.811 3.189 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.204 1.204 20 C -0.310 4.310 21 C -0.143 4.143 22 S 0.341 5.659 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.166 0.834 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.908 -9.753 13.080 20.804 hybrid contribution 0.801 1.757 -1.160 2.253 sum -12.107 -7.996 11.920 18.778 Atomic orbital electron populations 1.20414 0.85980 1.04126 1.03359 1.24750 1.01118 0.95105 1.09439 1.20186 0.92410 1.00121 1.04832 1.18983 0.95156 0.94356 1.03787 1.20295 0.96841 0.96215 0.95587 1.21084 0.97261 0.97025 0.96459 1.21530 1.00690 1.01075 0.92261 1.21349 0.83302 0.80582 0.92458 1.90466 1.60517 1.52654 1.49057 1.43904 1.36677 1.30942 1.07140 1.21438 0.96644 0.96278 0.87823 1.19570 1.01380 1.41940 0.84797 0.91514 1.26070 0.94039 0.97325 1.02960 1.70049 1.05832 1.43241 1.34400 0.85093 0.77785 0.78512 0.77519 1.19175 1.19269 1.20397 1.24502 0.99720 0.96121 1.10617 1.20409 0.89150 1.01278 1.03481 1.83993 0.96856 1.10207 1.74799 0.90342 0.90429 0.89234 0.83365 0.89325 0.89705 0.93733 0.93644 0.87711 0.88357 0.93865 0.92660 0.91071 0.91698 0.89238 0.91052 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.38 71.24 0.74 -0.44 16 2 C -0.19 -4.02 6.51 24.59 0.16 -3.86 16 3 C -0.15 -3.42 9.83 21.21 0.21 -3.21 16 4 C -0.11 -2.81 5.06 -20.92 -0.11 -2.92 16 5 C -0.05 -1.20 4.84 29.85 0.14 -1.05 16 6 C -0.08 -2.60 4.43 30.60 0.14 -2.47 16 7 C -0.12 -4.01 4.31 29.85 0.13 -3.88 16 8 C 0.43 21.66 7.63 87.66 0.67 22.33 16 9 O -0.64 -37.59 15.69 -3.07 -0.05 -37.64 16 10 N -0.47 -24.71 3.01 -658.89 -1.98 -26.69 16 11 C 0.12 5.32 8.44 127.77 1.08 6.40 16 12 C -0.35 -20.45 9.24 84.04 0.78 -19.67 16 13 H 0.07 4.19 7.45 -2.91 -0.02 4.17 16 14 C 0.00 -0.12 5.04 84.93 0.43 0.31 16 15 N -0.90 -48.24 10.83 21.66 0.23 -48.00 16 16 Si 0.99 43.28 29.57 68.60 2.03 45.31 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.19 -4.75 6.50 24.59 0.16 -4.59 16 21 C -0.08 -1.81 9.79 71.24 0.70 -1.11 16 22 S 0.08 1.70 23.31 -56.49 -1.32 0.39 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 27 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 28 H 0.08 1.80 7.52 -2.39 -0.02 1.79 16 29 H 0.04 1.64 7.24 -2.39 -0.02 1.62 16 30 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.10 3.04 7.41 -2.39 -0.02 3.02 16 32 H 0.10 3.03 8.11 -2.39 -0.02 3.02 16 33 H 0.04 1.93 7.83 -2.39 -0.02 1.92 16 34 H 0.05 2.59 6.80 -2.38 -0.02 2.58 16 35 H 0.07 2.43 6.61 -2.39 -0.02 2.41 16 36 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.71 6.50 -2.38 -0.02 1.70 16 Total: -1.00 -70.94 334.48 5.17 -65.77 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.03 Total: 15.03 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 5.22 Total: -14.17 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.75 Total: -74.69 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.05 Total: -37.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.32 Total: 0.39 kcal Total: -70.94 5.17 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084590309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.871 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds