Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00235 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00215 * 0.02562 * 12 10 9 14 14 C 1.46504 * 120.00031 * 179.97438 * 12 10 9 15 15 C 1.50702 * 109.46701 * 90.00590 * 14 12 10 16 16 H 1.08006 * 120.00102 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99886 * 180.02562 * 15 14 12 18 18 N 1.31508 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46939 * 90.00154 * 19 17 15 21 21 H 1.48500 * 109.46939 * 209.99851 * 19 17 15 22 22 H 1.48488 * 109.47453 * 329.99728 * 19 17 15 23 23 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 25 25 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 26 26 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 27 27 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 30 30 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 31 31 H 1.08990 * 109.47028 * 89.99332 * 13 12 10 32 32 H 1.08993 * 109.47000 * 209.99918 * 13 12 10 33 33 H 1.08998 * 109.46492 * 329.99432 * 13 12 10 34 34 H 1.09001 * 109.47433 * 209.99892 * 14 12 10 35 35 H 1.08995 * 109.47403 * 330.00393 * 14 12 10 36 36 H 0.97005 * 120.00182 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.01400 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6083 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 2.4399 -6.2069 -0.0044 14 6 4.7855 -7.1747 -0.0012 15 6 5.0902 -7.5736 1.4197 16 1 4.6615 -7.0176 2.2405 17 6 5.9170 -8.6477 1.6721 18 7 6.4393 -9.3244 0.6727 19 14 6.2951 -9.1417 3.4335 20 1 5.2860 -10.1269 3.8988 21 1 7.6478 -9.7511 3.4971 22 1 6.2522 -7.9401 4.3047 23 6 2.1970 -1.1972 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6554 2.1323 -0.0004 28 1 4.1167 2.1395 0.0010 29 1 2.8576 -3.5991 0.8882 30 1 2.8591 -3.5985 -0.8918 31 1 2.0817 -6.2545 -1.0327 32 1 2.1962 -7.1371 0.5087 33 1 1.9614 -5.3727 0.5088 34 1 4.3024 -8.0051 -0.5160 35 1 5.7130 -6.9196 -0.5138 36 1 7.0213 -10.0799 0.8502 37 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085555711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -90.601846 kcal Electronic energy + Delta-G solvation = -21395.711826 eV Core-core repulsion = 17860.248336 eV Total energy + Delta-G solvation = -3535.463489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.72671 -40.33806 -38.94847 -37.50007 -34.89001 -32.72605 -32.56378 -30.55269 -29.15900 -27.44073 -26.65159 -25.69038 -23.36070 -22.26525 -21.79597 -18.79387 -18.27876 -17.09649 -16.93144 -16.70548 -16.28386 -15.97170 -15.36441 -15.27184 -14.68037 -14.45641 -14.30745 -14.12960 -13.82448 -13.48474 -13.30469 -12.59649 -12.53228 -12.25285 -12.21708 -11.97529 -11.86543 -11.73966 -11.35168 -11.21799 -11.05932 -10.89068 -10.61243 -10.18540 -9.67442 -9.03688 -9.01718 -8.46289 -8.25510 -7.76266 -6.07194 -4.12361 0.90787 1.07971 2.75547 3.22264 3.29192 3.34325 3.36489 3.41694 3.95294 4.18078 4.41417 4.45805 4.50635 4.78554 4.89369 4.92825 5.03849 5.12135 5.21910 5.27598 5.29168 5.36552 5.50945 5.53485 5.79044 5.80204 5.84726 5.98837 6.09247 6.22940 6.46739 6.92374 7.20619 7.37198 7.45121 7.88566 8.18103 8.25547 8.82963 8.97287 9.52825 11.01024 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.003637 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.930351 B = 7697.245388 C = 8173.791030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.136 4.136 4 C -0.112 4.112 5 C 0.064 3.936 6 F -0.129 7.129 7 C 0.108 3.892 8 O -0.278 6.278 9 C 0.041 3.959 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.598 5.598 13 C 0.079 3.921 14 C 0.247 3.753 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.188 4.188 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 18.322 -2.569 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.155 4.155 4 C -0.131 4.131 5 C 0.044 3.956 6 F -0.108 7.108 7 C 0.061 3.939 8 O -0.190 6.190 9 C -0.038 4.038 10 C 0.290 3.710 11 O -0.389 6.389 12 N -0.333 5.333 13 C -0.065 4.065 14 C 0.128 3.872 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.207 4.207 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.265 18.173 -2.617 23.251 hybrid contribution 0.178 -0.496 1.001 1.131 sum -14.087 17.678 -1.616 22.662 Atomic orbital electron populations 1.20813 0.90482 1.03120 1.02710 1.19754 0.96416 0.92237 0.97369 1.20762 0.92911 0.97953 1.03826 1.20986 0.94842 0.96251 1.01047 1.17018 0.77474 0.91727 1.09404 1.91533 1.27936 1.97169 1.94158 1.19145 0.91072 0.85793 0.97905 1.86282 1.33916 1.11066 1.87718 1.22752 0.94457 0.83538 1.03009 1.19664 0.88777 0.83599 0.79003 1.90739 1.14973 1.85024 1.48189 1.48094 1.07065 1.06405 1.71695 1.21710 0.81331 1.02737 1.00691 1.19356 0.89415 0.80684 0.97735 1.21425 1.29633 1.13622 0.92197 0.92387 1.24938 0.95396 0.96165 0.97567 1.69927 1.32346 1.20190 1.30805 0.86472 0.77718 0.78604 0.84503 1.20604 1.21008 1.19849 1.21068 0.91730 0.99615 1.08287 0.90731 0.91183 0.91225 0.85002 0.84086 0.89313 0.89440 0.93353 0.90213 0.92708 0.94586 0.93636 0.92624 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.06 -0.52 5.88 -104.63 -0.62 -1.13 16 3 C -0.14 -1.18 9.69 -39.57 -0.38 -1.56 16 4 C -0.11 -1.17 10.02 -39.54 -0.40 -1.56 16 5 C 0.06 0.90 7.31 -39.29 -0.29 0.61 16 6 F -0.13 -2.14 17.11 2.25 0.04 -2.10 16 7 C 0.11 1.57 6.69 -39.18 -0.26 1.31 16 8 O -0.28 -4.99 9.53 -39.52 -0.38 -5.37 16 9 C 0.04 0.64 3.77 36.00 0.14 0.77 16 10 C 0.51 10.84 7.75 -10.99 -0.09 10.76 16 11 O -0.51 -13.84 16.08 -14.35 -0.23 -14.07 16 12 N -0.60 -12.53 2.86 -182.96 -0.52 -13.05 16 13 C 0.08 1.16 10.24 59.85 0.61 1.77 16 14 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 15 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.19 -2.06 8.69 -39.45 -0.34 -2.41 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.09 1.13 6.92 -51.93 -0.36 0.77 16 30 H 0.09 1.05 7.63 -51.93 -0.40 0.65 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -35.57 325.34 -6.90 -42.47 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -4.72 Total: -4.76 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.71 Total: 0.93 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.21 Total: -38.93 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.61 Total: -19.44 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.57 -6.90 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085555711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.132 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds