Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00235 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00215 * 0.02562 * 12 10 9 14 14 C 1.46504 * 120.00031 * 179.97438 * 12 10 9 15 15 C 1.50702 * 109.46701 * 90.00590 * 14 12 10 16 16 H 1.08006 * 120.00102 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99886 * 180.02562 * 15 14 12 18 18 N 1.31508 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46939 * 90.00154 * 19 17 15 21 21 H 1.48500 * 109.46939 * 209.99851 * 19 17 15 22 22 H 1.48488 * 109.47453 * 329.99728 * 19 17 15 23 23 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 25 25 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 26 26 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 27 27 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 30 30 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 31 31 H 1.08990 * 109.47028 * 89.99332 * 13 12 10 32 32 H 1.08993 * 109.47000 * 209.99918 * 13 12 10 33 33 H 1.08998 * 109.46492 * 329.99432 * 13 12 10 34 34 H 1.09001 * 109.47433 * 209.99892 * 14 12 10 35 35 H 1.08995 * 109.47403 * 330.00393 * 14 12 10 36 36 H 0.97005 * 120.00182 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.01400 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6083 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 2.4399 -6.2069 -0.0044 14 6 4.7855 -7.1747 -0.0012 15 6 5.0902 -7.5736 1.4197 16 1 4.6615 -7.0176 2.2405 17 6 5.9170 -8.6477 1.6721 18 7 6.4393 -9.3244 0.6727 19 14 6.2951 -9.1417 3.4335 20 1 5.2860 -10.1269 3.8988 21 1 7.6478 -9.7511 3.4971 22 1 6.2522 -7.9401 4.3047 23 6 2.1970 -1.1972 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6554 2.1323 -0.0004 28 1 4.1167 2.1395 0.0010 29 1 2.8576 -3.5991 0.8882 30 1 2.8591 -3.5985 -0.8918 31 1 2.0817 -6.2545 -1.0327 32 1 2.1962 -7.1371 0.5087 33 1 1.9614 -5.3727 0.5088 34 1 4.3024 -8.0051 -0.5160 35 1 5.7130 -6.9196 -0.5138 36 1 7.0213 -10.0799 0.8502 37 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085555711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -113.803146 kcal Electronic energy + Delta-G solvation = -21396.717909 eV Core-core repulsion = 17860.248336 eV Total energy + Delta-G solvation = -3536.469573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.82858 -41.46394 -40.36584 -38.57777 -36.67553 -34.79390 -33.32265 -31.55713 -30.63993 -28.91080 -27.49107 -27.16906 -24.97370 -23.52963 -22.63173 -20.34972 -19.33963 -18.75026 -18.16807 -18.02610 -17.59150 -17.32787 -17.02515 -16.57910 -16.18840 -15.60520 -15.44008 -15.22823 -14.79331 -14.45695 -14.24698 -14.18682 -13.81892 -13.80376 -13.51187 -13.15644 -12.95120 -12.82622 -12.79354 -12.56392 -12.50875 -12.24717 -12.11578 -11.94682 -11.73843 -10.74423 -10.66764 -9.83441 -9.53089 -9.17592 -8.25807 -6.40785 0.09633 0.24754 1.34577 1.38635 1.47435 1.55328 1.63212 2.35111 2.54677 2.61369 3.04282 3.26888 3.44138 3.76777 3.80365 3.89757 4.02104 4.16659 4.26229 4.39117 4.49467 4.70763 4.75760 4.92041 4.92422 4.94398 4.97100 5.02618 5.17906 5.20862 5.33120 5.49180 5.52747 5.70140 5.77900 6.01135 6.21589 6.60568 6.68833 7.21034 7.35360 8.81690 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.003637 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.930351 B = 7697.245388 C = 8173.791030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.126 4.126 4 C -0.108 4.108 5 C 0.018 3.982 6 F -0.158 7.158 7 C 0.077 3.923 8 O -0.324 6.324 9 C 0.056 3.944 10 C 0.492 3.508 11 O -0.588 6.588 12 N -0.602 5.602 13 C 0.070 3.930 14 C 0.259 3.741 15 C -0.547 4.547 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.275 1.275 23 C -0.187 4.187 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.161 0.839 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.034 0.966 35 H -0.005 1.005 36 H 0.268 0.732 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.337 19.850 -1.657 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.002 4.002 6 F -0.137 7.137 7 C 0.031 3.969 8 O -0.238 6.238 9 C -0.021 4.021 10 C 0.279 3.721 11 O -0.469 6.469 12 N -0.334 5.334 13 C -0.071 4.071 14 C 0.138 3.862 15 C -0.586 4.586 16 H 0.073 0.927 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.205 4.205 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.187 0.813 28 H 0.179 0.821 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.013 0.987 36 H 0.077 0.923 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.372 19.708 -1.712 26.998 hybrid contribution 1.322 -0.870 0.661 1.715 sum -17.050 18.839 -1.050 25.430 Atomic orbital electron populations 1.20914 0.87658 1.04594 1.03847 1.20240 0.98319 0.91520 0.95047 1.21263 0.92102 0.99603 1.01449 1.21304 0.95854 0.95619 0.99898 1.17666 0.76694 0.93435 1.12383 1.91447 1.30102 1.97379 1.94739 1.19460 0.92603 0.84450 1.00345 1.86200 1.36119 1.12538 1.88921 1.22684 0.92542 0.80431 1.06440 1.20809 0.88856 0.85205 0.77206 1.90694 1.18458 1.86248 1.51456 1.48089 1.09296 1.05108 1.70923 1.22110 0.77295 1.04358 1.03351 1.18824 0.88704 0.82468 0.96228 1.21715 1.30040 1.13806 0.93005 0.92728 1.25881 0.95044 0.96138 1.02137 1.70046 1.32887 1.20701 1.33106 0.85389 0.77987 0.78399 0.78878 1.18331 1.20689 1.20000 1.21373 0.90082 1.01626 1.07450 0.89541 0.89413 0.90213 0.81320 0.82126 0.85887 0.85286 0.90236 0.90853 0.88309 0.94854 0.98682 0.92304 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 71.24 0.71 -0.03 16 2 C -0.05 -0.71 5.88 -19.87 -0.12 -0.82 16 3 C -0.13 -1.71 9.69 22.28 0.22 -1.49 16 4 C -0.11 -2.08 10.02 22.30 0.22 -1.85 16 5 C 0.02 0.51 7.31 22.46 0.16 0.68 16 6 F -0.16 -5.63 17.11 44.97 0.77 -4.86 16 7 C 0.08 2.22 6.69 22.53 0.15 2.37 16 8 O -0.32 -11.88 9.53 -74.03 -0.71 -12.59 16 9 C 0.06 1.66 3.77 71.23 0.27 1.93 16 10 C 0.49 21.60 7.75 87.66 0.68 22.28 16 11 O -0.59 -33.86 16.08 16.02 0.26 -33.60 16 12 N -0.60 -25.38 2.86 -851.15 -2.43 -27.81 16 13 C 0.07 1.87 10.24 127.77 1.31 3.18 16 14 C 0.26 14.14 5.16 85.63 0.44 14.58 16 15 C -0.55 -31.99 9.39 25.60 0.24 -31.75 16 16 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 19 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 C -0.19 -3.53 8.69 22.35 0.19 -3.33 16 24 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.09 0.32 8.08 -2.39 -0.02 0.30 16 26 H 0.08 0.41 8.08 -2.38 -0.02 0.39 16 27 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.12 2.71 6.92 -2.39 -0.02 2.70 16 30 H 0.13 2.66 7.63 -2.39 -0.02 2.64 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 33 H 0.10 1.76 6.44 -2.39 -0.02 1.75 16 34 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 35 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 36 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.16 2.11 6.30 -2.91 -0.02 2.10 16 Total: -1.00 -86.01 325.34 6.22 -79.78 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.08 Total: 1.47 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 4.95 Total: 6.61 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.15 Total: -84.34 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.45 Total: -46.19 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.77 Total: -4.86 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -86.01 6.22 -79.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085555711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.019 kcal (2) G-P(sol) polarization free energy of solvation -86.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds