Wall clock time and date at job start Tue Mar 31 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48508 * 109.47356 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.47257 * 30.00276 * 3 2 1 6 6 H 1.48504 * 109.47061 * 150.00459 * 3 2 1 7 7 C 1.38801 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99867 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47196 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.46500 * 119.99810 * 270.00306 * 13 12 11 15 15 C 1.53002 * 109.46869 * 269.99977 * 14 13 12 16 16 O 1.42899 * 109.47154 * 65.00473 * 15 14 13 17 17 C 1.39672 * 119.99644 * 90.00174 * 13 12 11 18 18 C 1.38918 * 120.07035 * 179.97438 * 17 13 12 19 19 C 1.38103 * 119.92232 * 180.26003 * 18 17 13 20 20 C 1.38291 * 120.07426 * 359.43747 * 19 18 17 21 21 C 1.38281 * 120.14889 * 0.56232 * 20 19 18 22 22 C 1.38103 * 120.07737 * 359.72142 * 21 20 19 23 23 H 0.97004 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47614 * 60.00213 * 10 9 7 25 25 H 1.09007 * 109.47364 * 300.00190 * 10 9 7 26 26 H 1.09004 * 109.47193 * 60.00244 * 11 10 9 27 27 H 1.09002 * 109.47177 * 299.99797 * 11 10 9 28 28 H 1.08997 * 109.46986 * 60.00378 * 12 11 10 29 29 H 1.08993 * 109.47306 * 300.00074 * 12 11 10 30 30 H 1.08998 * 109.47261 * 29.99830 * 14 13 12 31 31 H 1.08996 * 109.46806 * 150.00562 * 14 13 12 32 32 H 1.09004 * 109.47361 * 185.00223 * 15 14 13 33 33 H 1.09002 * 109.47027 * 305.00151 * 15 14 13 34 34 H 0.96707 * 113.99626 * 180.02562 * 16 15 14 35 35 H 1.08002 * 120.03585 * 359.97438 * 18 17 13 36 36 H 1.08004 * 119.95970 * 179.72372 * 19 18 17 37 37 H 1.07994 * 119.92283 * 180.28458 * 20 19 18 38 38 H 1.07998 * 119.96595 * 179.74375 * 21 20 19 39 39 H 1.08001 * 120.04036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0864 -2.9846 -0.0009 11 6 5.5955 -3.2365 -0.0008 12 6 5.8611 -4.7433 0.0001 13 7 7.3062 -4.9844 -0.0005 14 6 8.0281 -5.1058 -1.2695 15 6 8.0420 -6.5709 -1.7102 16 8 6.7073 -6.9960 -1.9925 17 6 7.9955 -5.0986 1.2089 18 6 9.3657 -5.3277 1.2103 19 6 10.0433 -5.4455 2.4078 20 6 9.3614 -5.3239 3.6048 21 6 7.9976 -5.0958 3.6070 22 6 7.3127 -4.9828 2.4131 23 1 -0.4850 0.8401 0.0004 24 1 3.6432 -3.4319 -0.8907 25 1 3.6438 -3.4315 0.8893 26 1 6.0385 -2.7894 0.8892 27 1 6.0385 -2.7896 -0.8909 28 1 5.4182 -5.1908 -0.8897 29 1 5.4182 -5.1898 0.8902 30 1 7.5313 -4.5025 -2.0292 31 1 9.0522 -4.7557 -1.1397 32 1 8.6537 -6.6749 -2.6064 33 1 8.4584 -7.1863 -0.9127 34 1 6.6401 -7.9175 -2.2780 35 1 9.8995 -5.4183 0.2758 36 1 11.1078 -5.6281 2.4096 37 1 9.8946 -5.4118 4.5398 38 1 7.4673 -5.0054 4.5435 39 1 6.2475 -4.8050 2.4156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085823065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:37 Heat of formation + Delta-G solvation = -29.737289 kcal Electronic energy + Delta-G solvation = -19247.812255 eV Core-core repulsion = 16281.201227 eV Total energy + Delta-G solvation = -2966.611028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76244 -37.48422 -36.07052 -33.27107 -32.41817 -31.05668 -30.24108 -28.50231 -25.81669 -25.26332 -23.29079 -22.22374 -21.51293 -20.16691 -18.14701 -17.46866 -17.19777 -16.21538 -15.59725 -15.09659 -14.95987 -14.82668 -14.36132 -14.11011 -13.96024 -13.62850 -13.34549 -13.08942 -12.82313 -12.45137 -12.15389 -11.96801 -11.68626 -11.58953 -11.36322 -11.09040 -11.02476 -10.78090 -10.44193 -10.36870 -10.21847 -9.88236 -9.62449 -8.98705 -8.89790 -8.53882 -7.24108 -6.91942 -6.26532 -3.98453 1.46460 1.64664 2.95465 3.14820 3.31436 3.47375 3.62951 3.90849 4.04053 4.33541 4.80145 4.82687 4.83851 4.92879 4.98807 5.09564 5.11845 5.12974 5.25866 5.34147 5.45225 5.50678 5.58509 5.64232 5.71343 5.72555 5.86710 5.97527 6.05428 6.27562 6.32707 6.46050 6.52281 6.65805 6.69334 6.90679 7.29701 7.38182 7.57563 7.97374 8.46416 9.19589 10.83041 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003816 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.114194 B = 7336.630640 C = 8190.942110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.502 4.502 8 H 0.088 0.912 9 S -0.216 6.216 10 C -0.080 4.080 11 C -0.119 4.119 12 C 0.130 3.870 13 N -0.616 5.616 14 C 0.122 3.878 15 C 0.056 3.944 16 O -0.565 6.565 17 C 0.222 3.778 18 C -0.207 4.207 19 C -0.075 4.075 20 C -0.187 4.187 21 C -0.071 4.071 22 C -0.194 4.194 23 H 0.270 0.730 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.331 -14.399 0.389 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.649 4.649 8 H 0.106 0.894 9 S 0.011 5.989 10 C -0.229 4.229 11 C -0.159 4.159 12 C 0.005 3.995 13 N -0.324 5.324 14 C -0.002 4.002 15 C -0.023 4.023 16 O -0.370 6.370 17 C 0.120 3.880 18 C -0.230 4.230 19 C -0.094 4.094 20 C -0.208 4.208 21 C -0.090 4.090 22 C -0.216 4.216 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.222 0.778 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.635 -12.774 0.379 24.272 hybrid contribution -0.610 -0.759 -0.221 0.998 sum 20.025 -13.533 0.158 24.170 Atomic orbital electron populations 1.69940 1.05921 1.27668 1.48414 1.24788 0.94494 0.98976 0.93366 0.86675 0.81767 0.83252 0.79677 1.19404 1.20108 1.16196 1.22137 0.87125 0.97406 1.58244 0.89409 1.84178 1.11622 1.05525 1.97526 1.22972 0.97081 0.99147 1.03699 1.21783 0.95183 0.95925 1.02972 1.21550 0.79238 0.95422 1.03252 1.46543 1.07196 1.76654 1.02055 1.21484 0.97952 0.94598 0.86162 1.22746 0.84173 0.96852 0.98528 1.86541 1.27486 1.32788 1.90205 1.17904 0.91133 0.92957 0.86043 1.20614 0.92634 1.11332 0.98391 1.20821 0.99022 0.97437 0.92120 1.20849 0.94691 1.07568 0.97650 1.20914 0.94260 0.96502 0.97310 1.20804 1.00385 1.09339 0.91106 0.92004 0.91368 0.91407 0.91380 0.91597 0.89718 0.90962 0.89780 0.89392 0.93229 0.93488 0.77767 0.86535 0.86656 0.86850 0.86340 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.07 13.97 55.49 0.78 -26.29 16 2 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 3 Si 0.86 21.87 27.74 -169.99 -4.71 17.15 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.50 -14.76 10.04 30.94 0.31 -14.45 16 8 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 9 S -0.22 -5.38 19.41 -107.50 -2.09 -7.47 16 10 C -0.08 -1.58 5.67 37.16 0.21 -1.36 16 11 C -0.12 -1.90 5.54 -26.73 -0.15 -2.05 16 12 C 0.13 1.75 4.98 -4.03 -0.02 1.73 16 13 N -0.62 -7.49 2.57 -171.75 -0.44 -7.93 16 14 C 0.12 1.20 5.56 -4.04 -0.02 1.18 16 15 C 0.06 0.47 7.39 37.16 0.27 0.75 16 16 O -0.57 -5.52 12.48 -35.23 -0.44 -5.96 16 17 C 0.22 2.79 6.55 -83.78 -0.55 2.24 16 18 C -0.21 -2.28 9.21 -39.38 -0.36 -2.64 16 19 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 20 C -0.19 -2.02 10.04 -39.55 -0.40 -2.42 16 21 C -0.07 -0.83 10.04 -39.61 -0.40 -1.23 16 22 C -0.19 -2.52 9.21 -39.38 -0.36 -2.88 16 23 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 25 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.18 7.11 -51.93 -0.37 0.81 16 29 H 0.07 0.97 6.20 -51.93 -0.32 0.65 16 30 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 31 H 0.09 0.72 6.20 -51.93 -0.32 0.40 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 2.09 9.12 45.56 0.42 2.50 16 35 H 0.12 1.06 6.14 -52.49 -0.32 0.73 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.65 6.14 -52.49 -0.32 1.32 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -33.12 335.25 -8.86 -41.97 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.04 Total: 3.16 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.96 Total: -19.70 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.33 Total: -34.22 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.44 Total: -5.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.09 Total: -7.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.12 -8.86 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085823065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.236 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds