Wall clock time and date at job start Tue Mar 31 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48508 * 109.47356 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.47257 * 30.00276 * 3 2 1 6 6 H 1.48504 * 109.47061 * 150.00459 * 3 2 1 7 7 C 1.38801 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99867 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47196 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.46500 * 119.99810 * 270.00306 * 13 12 11 15 15 C 1.53002 * 109.46869 * 269.99977 * 14 13 12 16 16 O 1.42899 * 109.47154 * 65.00473 * 15 14 13 17 17 C 1.39672 * 119.99644 * 90.00174 * 13 12 11 18 18 C 1.38918 * 120.07035 * 179.97438 * 17 13 12 19 19 C 1.38103 * 119.92232 * 180.26003 * 18 17 13 20 20 C 1.38291 * 120.07426 * 359.43747 * 19 18 17 21 21 C 1.38281 * 120.14889 * 0.56232 * 20 19 18 22 22 C 1.38103 * 120.07737 * 359.72142 * 21 20 19 23 23 H 0.97004 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47614 * 60.00213 * 10 9 7 25 25 H 1.09007 * 109.47364 * 300.00190 * 10 9 7 26 26 H 1.09004 * 109.47193 * 60.00244 * 11 10 9 27 27 H 1.09002 * 109.47177 * 299.99797 * 11 10 9 28 28 H 1.08997 * 109.46986 * 60.00378 * 12 11 10 29 29 H 1.08993 * 109.47306 * 300.00074 * 12 11 10 30 30 H 1.08998 * 109.47261 * 29.99830 * 14 13 12 31 31 H 1.08996 * 109.46806 * 150.00562 * 14 13 12 32 32 H 1.09004 * 109.47361 * 185.00223 * 15 14 13 33 33 H 1.09002 * 109.47027 * 305.00151 * 15 14 13 34 34 H 0.96707 * 113.99626 * 180.02562 * 16 15 14 35 35 H 1.08002 * 120.03585 * 359.97438 * 18 17 13 36 36 H 1.08004 * 119.95970 * 179.72372 * 19 18 17 37 37 H 1.07994 * 119.92283 * 180.28458 * 20 19 18 38 38 H 1.07998 * 119.96595 * 179.74375 * 21 20 19 39 39 H 1.08001 * 120.04036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0864 -2.9846 -0.0009 11 6 5.5955 -3.2365 -0.0008 12 6 5.8611 -4.7433 0.0001 13 7 7.3062 -4.9844 -0.0005 14 6 8.0281 -5.1058 -1.2695 15 6 8.0420 -6.5709 -1.7102 16 8 6.7073 -6.9960 -1.9925 17 6 7.9955 -5.0986 1.2089 18 6 9.3657 -5.3277 1.2103 19 6 10.0433 -5.4455 2.4078 20 6 9.3614 -5.3239 3.6048 21 6 7.9976 -5.0958 3.6070 22 6 7.3127 -4.9828 2.4131 23 1 -0.4850 0.8401 0.0004 24 1 3.6432 -3.4319 -0.8907 25 1 3.6438 -3.4315 0.8893 26 1 6.0385 -2.7894 0.8892 27 1 6.0385 -2.7896 -0.8909 28 1 5.4182 -5.1908 -0.8897 29 1 5.4182 -5.1898 0.8902 30 1 7.5313 -4.5025 -2.0292 31 1 9.0522 -4.7557 -1.1397 32 1 8.6537 -6.6749 -2.6064 33 1 8.4584 -7.1863 -0.9127 34 1 6.6401 -7.9175 -2.2780 35 1 9.8995 -5.4183 0.2758 36 1 11.1078 -5.6281 2.4096 37 1 9.8946 -5.4118 4.5398 38 1 7.4673 -5.0054 4.5435 39 1 6.2475 -4.8050 2.4156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085823065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:36 Heat of formation + Delta-G solvation = -50.749534 kcal Electronic energy + Delta-G solvation = -19248.723414 eV Core-core repulsion = 16281.201227 eV Total energy + Delta-G solvation = -2967.522187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63172 -38.25134 -36.95838 -34.70638 -34.47028 -31.92725 -31.03999 -29.51772 -27.97816 -26.48633 -24.10035 -23.27109 -22.58368 -21.09872 -19.64050 -18.93149 -17.97824 -17.19032 -17.06405 -16.54400 -16.20041 -16.01595 -15.60222 -15.03751 -15.00047 -14.95523 -14.56130 -14.25713 -14.03060 -13.70718 -13.45415 -13.27973 -13.00404 -12.93960 -12.76775 -12.40855 -12.22892 -12.15462 -11.85142 -11.77051 -11.51115 -11.17862 -10.90679 -10.70037 -10.55347 -9.75277 -9.01371 -8.53296 -8.14577 -6.24870 0.60968 0.78130 1.10679 1.30327 1.46337 1.70568 2.21320 2.23829 2.67394 2.84738 3.06681 3.43512 3.84763 3.99930 4.11762 4.14943 4.21706 4.24190 4.37208 4.39573 4.44976 4.53120 4.60360 4.67773 4.69933 4.72895 4.85010 4.93184 4.97894 5.06378 5.23534 5.25404 5.46343 5.68544 5.68753 5.82288 6.07568 6.08727 6.38820 6.65925 6.90815 6.93218 8.59996 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003816 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.114194 B = 7336.630640 C = 8190.942110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.232 1.232 7 C -0.523 4.523 8 H 0.050 0.950 9 S -0.222 6.222 10 C -0.067 4.067 11 C -0.102 4.102 12 C 0.143 3.857 13 N -0.619 5.619 14 C 0.115 3.885 15 C 0.060 3.940 16 O -0.590 6.590 17 C 0.206 3.794 18 C -0.208 4.208 19 C -0.077 4.077 20 C -0.192 4.192 21 C -0.084 4.084 22 C -0.219 4.219 23 H 0.277 0.723 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.392 0.608 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.292 -14.511 0.240 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.155 1.155 7 C -0.670 4.670 8 H 0.069 0.931 9 S 0.006 5.994 10 C -0.216 4.216 11 C -0.142 4.142 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.008 4.008 15 C -0.018 4.018 16 O -0.398 6.398 17 C 0.104 3.896 18 C -0.231 4.231 19 C -0.095 4.095 20 C -0.212 4.212 21 C -0.102 4.102 22 C -0.241 4.241 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 23.610 -12.915 0.226 26.912 hybrid contribution -1.509 -0.870 -0.153 1.749 sum 22.101 -13.785 0.073 26.048 Atomic orbital electron populations 1.70036 1.07629 1.29131 1.49214 1.25763 0.95402 1.02697 0.92690 0.85716 0.80685 0.78691 0.80258 1.18503 1.18572 1.15503 1.22341 0.90008 0.96294 1.58393 0.93133 1.83874 1.07637 1.10292 1.97573 1.23020 0.99852 0.95120 1.03582 1.21647 0.91982 0.97961 1.02570 1.21246 0.80793 0.93149 1.03032 1.46523 1.06427 1.76907 1.02927 1.21710 0.98501 0.95768 0.84851 1.22731 0.83941 0.95608 0.99558 1.86490 1.28505 1.34416 1.90427 1.18099 0.91980 0.93697 0.85848 1.20895 0.91971 1.10500 0.99698 1.21207 1.00452 0.96241 0.91617 1.21170 0.94352 1.06758 0.98942 1.21137 0.95092 0.96644 0.97352 1.20879 1.00103 1.10952 0.92174 0.91353 0.91439 0.91588 0.92075 0.91494 0.89907 0.91204 0.90558 0.87563 0.90738 0.93527 0.75872 0.84487 0.83865 0.84855 0.85418 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.59 13.97 21.65 0.30 -57.29 16 2 C 0.04 2.35 5.50 84.86 0.47 2.81 16 3 Si 0.93 44.98 27.74 68.60 1.90 46.88 16 4 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.23 -10.93 6.74 99.48 0.67 -10.26 16 7 C -0.52 -31.56 10.04 67.95 0.68 -30.88 16 8 H 0.05 3.31 8.03 -2.91 -0.02 3.29 16 9 S -0.22 -11.02 19.41 -56.49 -1.10 -12.12 16 10 C -0.07 -2.65 5.67 71.98 0.41 -2.24 16 11 C -0.10 -3.20 5.54 30.60 0.17 -3.03 16 12 C 0.14 3.82 4.98 86.38 0.43 4.25 16 13 N -0.62 -14.31 2.57 -697.28 -1.79 -16.10 16 14 C 0.11 2.03 5.56 86.38 0.48 2.51 16 15 C 0.06 0.87 7.39 71.98 0.53 1.40 16 16 O -0.59 -10.64 12.48 -148.98 -1.86 -12.50 16 17 C 0.21 4.91 6.55 38.22 0.25 5.16 16 18 C -0.21 -4.07 9.21 22.40 0.21 -3.86 16 19 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 20 C -0.19 -3.72 10.04 22.29 0.22 -3.50 16 21 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 22 C -0.22 -5.62 9.21 22.40 0.21 -5.41 16 23 H 0.28 15.91 8.31 -92.71 -0.77 15.13 16 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.26 7.11 -2.39 -0.02 2.24 16 29 H 0.07 1.89 6.20 -2.39 -0.01 1.88 16 30 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.11 1.44 6.20 -2.39 -0.01 1.43 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.39 3.77 9.12 -74.05 -0.68 3.09 16 35 H 0.14 2.02 6.14 -2.91 -0.02 2.00 16 36 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.11 3.04 6.14 -2.91 -0.02 3.02 16 Total: -1.00 -71.68 335.25 2.29 -69.39 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.33 Total: 17.32 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 4.50 Total: -35.59 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.49 Total: -73.39 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.86 Total: -12.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.10 Total: -12.12 kcal Total: -71.68 2.29 -69.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085823065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.645 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds