Wall clock time and date at job start Tue Mar 31 2020 05:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00139 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46827 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 25 25 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 27 27 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 28 28 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 29 29 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 30 30 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00622 * 19 18 16 32 32 H 1.09005 * 109.46669 * 59.99772 * 19 18 16 33 33 H 1.09000 * 109.47607 * 299.99816 * 20 19 18 34 34 H 1.09005 * 109.47442 * 60.00245 * 20 19 18 35 35 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 36 36 H 1.08993 * 109.46785 * 60.00206 * 21 20 19 37 37 H 1.07998 * 120.03894 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 6 10.0444 -4.0177 2.3636 20 6 11.5666 -4.0919 2.2289 21 6 12.1980 -4.1794 3.6198 22 9 13.5899 -4.2478 3.4966 23 6 5.3549 -2.4724 -0.2272 24 1 -0.4849 0.8401 -0.0004 25 1 2.1493 -3.5267 0.0145 26 1 3.2702 -5.7081 -0.1897 27 1 5.7197 -5.8204 -0.4050 28 1 7.7494 -4.6563 -1.0449 29 1 7.8421 -2.8801 -0.9753 30 1 10.0035 -3.9337 0.2424 31 1 9.7737 -3.1339 2.9413 32 1 9.6803 -4.9101 2.8727 33 1 11.8377 -4.9755 1.6511 34 1 11.9303 -3.1992 1.7199 35 1 11.9271 -3.2961 4.1980 36 1 11.8343 -5.0722 4.1283 37 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089857202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:06 Heat of formation + Delta-G solvation = -101.810747 kcal Electronic energy + Delta-G solvation = -20644.134030 eV Core-core repulsion = 17108.184487 eV Total energy + Delta-G solvation = -3535.949544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.02973 -39.92862 -38.93020 -36.74290 -35.76703 -32.73863 -32.35680 -31.82725 -29.42668 -27.58888 -25.59506 -25.02979 -22.38324 -21.79750 -21.15156 -20.11574 -17.71228 -17.30998 -16.96721 -16.93836 -16.54291 -15.64426 -15.54810 -15.16510 -15.02525 -14.80781 -14.24209 -13.86891 -13.73849 -13.52953 -13.43609 -12.61087 -12.51504 -12.24769 -12.17807 -12.12899 -11.66049 -11.63947 -11.28593 -11.17433 -10.82506 -10.78416 -10.69291 -10.13494 -9.83956 -9.35884 -9.26007 -8.83955 -8.12000 -7.32673 -6.37811 -4.04402 2.03060 2.31718 2.68153 3.02373 3.24524 3.27371 3.43274 4.18449 4.25169 4.26999 4.31914 4.50326 4.61764 4.74611 4.87847 4.93957 5.07446 5.10342 5.17512 5.31344 5.38776 5.50696 5.57106 5.65567 5.71103 5.86674 6.14922 6.22454 6.28272 6.55647 6.81896 7.12736 7.24041 7.32893 7.35826 7.64140 7.84457 8.08047 8.21780 8.97791 9.60978 10.70096 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.003066 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.478392 B = 9131.037263 C = 9959.754647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.036 4.036 15 C -0.093 4.093 16 C 0.513 3.487 17 O -0.518 6.518 18 N -0.740 5.740 19 C 0.121 3.879 20 C -0.165 4.165 21 C 0.065 3.935 22 F -0.218 7.218 23 C -0.175 4.175 24 H 0.279 0.721 25 H 0.133 0.867 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.125 -8.766 0.944 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.095 4.095 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.133 4.133 16 C 0.299 3.701 17 O -0.391 6.391 18 N -0.395 5.395 19 C -0.003 4.003 20 C -0.203 4.203 21 C 0.009 3.991 22 F -0.199 7.199 23 C -0.194 4.194 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.495 -8.392 1.713 23.139 hybrid contribution 0.446 0.634 -0.359 0.854 sum 21.941 -7.758 1.354 23.311 Atomic orbital electron populations 1.69649 1.05542 1.28392 1.48399 1.24455 0.95019 0.98775 0.95785 0.86185 0.80375 0.81491 0.78878 1.19919 1.20820 1.18386 1.20767 0.76925 0.96614 1.52081 0.87656 1.83567 1.22567 1.25641 1.80694 1.19010 0.91519 0.85548 0.93073 1.21303 1.01165 0.91968 1.09178 1.20739 0.94141 0.96738 0.97833 1.20416 0.93917 0.96412 1.09951 1.18654 0.92014 0.93037 0.99957 1.20588 0.93900 1.04605 0.94232 1.20791 0.81436 0.75755 0.92080 1.90770 1.61151 1.47249 1.39956 1.45991 1.07255 1.77496 1.08725 1.21130 0.90871 1.02856 0.85455 1.22363 0.95367 1.04478 0.98125 1.21858 0.75488 1.04121 0.97629 1.92778 1.31803 1.98060 1.97276 1.19939 0.91996 0.96983 1.10516 0.91122 0.84981 0.87161 0.87735 0.88245 0.88198 0.76618 0.91132 0.91187 0.90032 0.89976 0.90246 0.90296 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.85 13.96 55.48 0.77 -25.08 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.05 28.62 -169.99 -4.86 17.19 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.39 -11.18 9.95 30.89 0.31 -10.88 16 8 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 9 O -0.22 -5.96 8.59 0.05 0.00 -5.96 16 10 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.22 -4.87 9.17 -39.40 -0.36 -5.23 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.27 9.70 -39.54 -0.38 -3.65 16 14 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.12 5.83 -29.03 -0.17 -1.29 16 16 C 0.51 6.77 7.82 -10.99 -0.09 6.68 16 17 O -0.52 -9.52 16.03 5.56 0.09 -9.43 16 18 N -0.74 -6.48 5.56 -60.30 -0.33 -6.81 16 19 C 0.12 0.95 5.67 -4.05 -0.02 0.93 16 20 C -0.17 -0.88 5.78 -26.73 -0.15 -1.03 16 21 C 0.06 0.36 7.55 37.16 0.28 0.64 16 22 F -0.22 -1.83 17.36 2.25 0.04 -1.79 16 23 C -0.18 -3.60 9.65 -39.39 -0.38 -3.98 16 24 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.13 3.09 5.64 -52.48 -0.30 2.79 16 26 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.40 2.18 8.47 -40.82 -0.35 1.84 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -34.39 326.16 -6.27 -40.66 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.71 Total: 1.77 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.18 Total: -15.46 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.44 Total: -31.89 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.39 -6.27 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089857202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.148 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds