Wall clock time and date at job start Tue Mar 31 2020 05:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00139 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46827 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 25 25 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 27 27 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 28 28 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 29 29 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 30 30 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00622 * 19 18 16 32 32 H 1.09005 * 109.46669 * 59.99772 * 19 18 16 33 33 H 1.09000 * 109.47607 * 299.99816 * 20 19 18 34 34 H 1.09005 * 109.47442 * 60.00245 * 20 19 18 35 35 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 36 36 H 1.08993 * 109.46785 * 60.00206 * 21 20 19 37 37 H 1.07998 * 120.03894 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 6 10.0444 -4.0177 2.3636 20 6 11.5666 -4.0919 2.2289 21 6 12.1980 -4.1794 3.6198 22 9 13.5899 -4.2478 3.4966 23 6 5.3549 -2.4724 -0.2272 24 1 -0.4849 0.8401 -0.0004 25 1 2.1493 -3.5267 0.0145 26 1 3.2702 -5.7081 -0.1897 27 1 5.7197 -5.8204 -0.4050 28 1 7.7494 -4.6563 -1.0449 29 1 7.8421 -2.8801 -0.9753 30 1 10.0035 -3.9337 0.2424 31 1 9.7737 -3.1339 2.9413 32 1 9.6803 -4.9101 2.8727 33 1 11.8377 -4.9755 1.6511 34 1 11.9303 -3.1992 1.7199 35 1 11.9271 -3.2961 4.1980 36 1 11.8343 -5.0722 4.1283 37 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089857202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:05 Heat of formation + Delta-G solvation = -125.499726 kcal Electronic energy + Delta-G solvation = -20645.161261 eV Core-core repulsion = 17108.184487 eV Total energy + Delta-G solvation = -3536.976775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.57398 -41.16977 -40.44846 -38.35217 -36.61138 -34.48442 -33.74496 -32.85100 -31.07159 -28.78794 -27.23287 -26.19404 -23.39557 -22.92034 -22.54509 -21.30751 -19.66079 -18.91618 -17.98058 -17.44389 -17.33434 -16.86868 -16.76997 -16.25634 -16.15863 -15.76032 -15.65683 -15.63562 -15.03193 -14.83024 -14.58104 -14.34675 -14.13086 -13.91258 -13.04072 -12.96943 -12.79813 -12.66033 -12.51014 -12.43968 -12.33837 -12.14485 -11.93024 -11.60263 -11.31333 -10.96904 -10.88403 -10.08633 -9.66364 -9.06185 -8.50501 -6.23268 0.49054 0.70545 1.29558 1.34258 1.51003 1.70078 2.19969 2.27712 2.78668 3.05463 3.14794 3.67926 3.77242 3.85401 3.86094 4.08178 4.15611 4.27494 4.30562 4.37107 4.45784 4.56256 4.60492 4.66899 4.71805 4.78802 4.97963 5.00602 5.17052 5.25666 5.39437 5.46715 5.65441 5.72983 5.76802 5.91797 6.25521 6.60377 6.83816 7.33290 7.58869 8.61411 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.003066 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.478392 B = 9131.037263 C = 9959.754647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.242 4.242 12 C -0.079 4.079 13 C -0.171 4.171 14 C -0.029 4.029 15 C -0.090 4.090 16 C 0.513 3.487 17 O -0.580 6.580 18 N -0.718 5.718 19 C 0.120 3.880 20 C -0.151 4.151 21 C 0.058 3.942 22 F -0.234 7.234 23 C -0.182 4.182 24 H 0.285 0.715 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.420 0.580 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.886 -9.912 -0.007 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.261 4.261 12 C -0.097 4.097 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.129 4.129 16 C 0.300 3.700 17 O -0.459 6.459 18 N -0.373 5.373 19 C -0.004 4.004 20 C -0.189 4.189 21 C 0.003 3.997 22 F -0.215 7.215 23 C -0.201 4.201 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.158 0.842 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.146 0.854 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.333 -9.578 0.723 27.093 hybrid contribution -0.503 0.682 -0.069 0.850 sum 24.831 -8.896 0.654 26.384 Atomic orbital electron populations 1.69733 1.06878 1.29583 1.50329 1.25295 0.95920 1.02176 0.95549 0.85198 0.78616 0.77326 0.79431 1.18626 1.19100 1.19130 1.20716 0.78149 0.96128 1.52645 0.90318 1.83504 1.21216 1.27395 1.83383 1.19609 0.93159 0.85133 0.95176 1.21330 1.00204 0.93507 1.11041 1.21120 0.95575 0.96239 0.96739 1.21025 0.93172 0.98439 1.06294 1.19255 0.95341 0.91541 0.96817 1.20712 0.89647 1.08193 0.94394 1.20952 0.82428 0.75000 0.91612 1.90769 1.62769 1.50584 1.41793 1.45800 1.06135 1.75258 1.10060 1.21164 0.92455 1.02045 0.84776 1.22226 0.93117 1.05364 0.98199 1.22020 0.74431 1.05179 0.98093 1.92747 1.33237 1.98160 1.97364 1.20293 0.90560 0.99103 1.10172 0.90562 0.87584 0.84221 0.83318 0.83784 0.85426 0.74251 0.92420 0.91741 0.88880 0.89308 0.89512 0.89145 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.59 13.96 21.61 0.30 -56.29 16 2 C 0.01 0.52 5.49 84.83 0.47 0.98 16 3 Si 0.97 46.75 28.62 68.60 1.96 48.71 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.40 -24.53 9.95 67.92 0.68 -23.86 16 8 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 9 O -0.25 -14.10 8.59 -22.74 -0.20 -14.30 16 10 C 0.12 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 12 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 13 C -0.17 -5.32 9.70 22.30 0.22 -5.10 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 15 C -0.09 -1.71 5.83 29.10 0.17 -1.54 16 16 C 0.51 11.71 7.82 87.66 0.69 12.39 16 17 O -0.58 -20.35 16.03 -3.03 -0.05 -20.40 16 18 N -0.72 -9.75 5.56 -463.06 -2.57 -12.33 16 19 C 0.12 1.57 5.67 86.38 0.49 2.06 16 20 C -0.15 -1.12 5.78 30.59 0.18 -0.94 16 21 C 0.06 0.51 7.55 71.98 0.54 1.05 16 22 F -0.23 -3.47 17.36 44.97 0.78 -2.69 16 23 C -0.18 -7.38 9.65 22.39 0.22 -7.16 16 24 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.11 5.42 5.64 -2.91 -0.02 5.40 16 26 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.14 1.54 8.09 -2.38 -0.02 1.52 16 29 H 0.13 1.81 8.08 -2.39 -0.02 1.79 16 30 H 0.42 2.44 8.47 -92.71 -0.79 1.66 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -80.71 326.16 4.67 -76.04 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.31 Total: 12.12 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.13 Total: -30.87 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -2.27 Total: -68.62 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.24 Total: -34.70 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.96 Total: 48.71 kcal Total: -80.71 4.67 -76.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089857202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.458 kcal (2) G-P(sol) polarization free energy of solvation -80.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds