Wall clock time and date at job start Tue Mar 31 2020 05:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48495 * 109.47015 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.47051 * 29.99629 * 3 2 1 6 6 H 1.48504 * 109.46936 * 149.99620 * 3 2 1 7 7 C 1.37871 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47344 * 179.97438 * 9 7 2 11 11 C 1.38359 * 119.85539 * 89.99806 * 10 9 7 12 12 C 1.37956 * 120.15096 * 180.02562 * 11 10 9 13 13 C 1.39589 * 119.84991 * 0.02562 * 12 11 10 14 14 C 1.47807 * 120.14630 * 180.02562 * 13 12 11 15 15 O 1.21561 * 119.99993 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99951 * 180.27632 * 14 13 12 17 17 C 1.39851 * 120.00139 * 175.08663 * 16 14 13 18 18 C 1.38882 * 120.07602 * 214.82550 * 17 16 14 19 19 C 1.38105 * 119.92873 * 179.74806 * 18 17 16 20 20 C 1.38290 * 120.07347 * 0.52485 * 19 18 17 21 21 C 1.38288 * 120.14138 * 359.72454 * 20 19 18 22 22 C 1.38108 * 120.07157 * 0.02562 * 21 20 19 23 23 C 1.39593 * 119.70551 * 0.27879 * 13 12 11 24 24 C 1.37955 * 119.85200 * 359.42573 * 23 13 12 25 25 H 0.97004 * 120.00627 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47315 * 59.99687 * 9 7 2 27 27 H 1.09007 * 109.46670 * 299.99635 * 9 7 2 28 28 H 1.08005 * 119.92828 * 0.02562 * 11 10 9 29 29 H 1.07995 * 120.07584 * 180.02562 * 12 11 10 30 30 H 0.97001 * 120.00491 * 355.09229 * 16 14 13 31 31 H 1.08008 * 120.03938 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.96820 * 180.27601 * 19 18 17 33 33 H 1.07994 * 119.93225 * 179.70269 * 20 19 18 34 34 H 1.07995 * 119.96427 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03579 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.07078 * 179.72403 * 23 13 12 37 37 H 1.08004 * 119.92567 * 180.27558 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6780 -4.1680 1.2005 12 6 3.5749 -5.2161 1.2076 13 6 4.0313 -5.7483 0.0005 14 6 4.9918 -6.8717 0.0005 15 8 5.3858 -7.3346 1.0532 16 7 5.4348 -7.3796 -1.1667 17 6 6.4200 -8.3722 -1.1684 18 6 7.3702 -8.4079 -2.1807 19 6 8.3448 -9.3864 -2.1765 20 6 8.3688 -10.3364 -1.1718 21 6 7.4210 -10.3066 -0.1653 22 6 6.4468 -9.3278 -0.1608 23 6 3.5805 -5.2113 -1.2066 24 6 2.6789 -4.1671 -1.1995 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.3245 -3.7551 2.1338 29 1 3.9232 -5.6241 2.1450 30 1 5.0704 -7.0566 -2.0056 31 1 7.3492 -7.6692 -2.9683 32 1 9.0868 -9.4121 -2.9609 33 1 9.1291 -11.1033 -1.1735 34 1 7.4422 -11.0502 0.6177 35 1 5.7066 -9.3053 0.6253 36 1 3.9332 -5.6155 -2.1439 37 1 2.3260 -3.7537 -2.1327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:49 Heat of formation + Delta-G solvation = 7.664064 kcal Electronic energy + Delta-G solvation = -19886.344966 eV Core-core repulsion = 16785.911832 eV Total energy + Delta-G solvation = -3100.433135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69590 -38.98901 -37.89072 -34.89765 -33.60335 -31.66819 -31.05521 -30.58418 -29.58023 -27.39588 -24.28886 -23.08181 -22.65854 -22.06477 -21.23938 -19.92405 -18.31893 -17.28493 -16.44180 -16.38351 -15.35646 -15.32096 -14.97056 -14.50627 -14.40272 -14.16108 -14.12634 -13.51690 -13.17194 -12.98628 -12.90841 -12.63722 -11.96400 -11.89527 -11.42781 -11.41353 -11.38074 -10.86272 -10.68319 -10.48207 -10.41216 -9.92835 -9.65147 -9.58181 -9.07278 -8.57293 -8.51843 -8.34542 -8.03624 -6.14733 -4.19615 0.99367 1.25206 1.40659 1.83242 2.94623 3.04202 3.24605 3.31523 3.35695 3.68802 4.25165 4.41509 4.66444 4.79451 4.84110 5.00078 5.09482 5.20773 5.24962 5.32036 5.41307 5.46357 5.76884 5.84488 5.86437 5.95932 6.16558 6.19736 6.33494 6.36522 6.40641 6.41467 6.65222 6.89817 6.91244 6.96234 7.30302 7.33795 7.46208 7.64572 7.80348 8.09934 8.16995 8.85350 9.45141 10.95138 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.002914 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.959195 B = 9605.299891 C = 9874.244816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.003 3.997 11 C -0.134 4.134 12 C -0.054 4.054 13 C -0.178 4.178 14 C 0.569 3.431 15 O -0.527 6.527 16 N -0.676 5.676 17 C 0.151 3.849 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.085 4.085 24 C -0.133 4.133 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.411 0.589 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.778 -17.519 -4.765 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.005 3.995 10 C 0.002 3.998 11 C -0.152 4.152 12 C -0.073 4.073 13 C -0.181 4.181 14 C 0.360 3.640 15 O -0.404 6.404 16 N -0.321 5.321 17 C 0.057 3.943 18 C -0.169 4.169 19 C -0.121 4.121 20 C -0.160 4.160 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.103 4.103 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.248 0.752 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.858 -17.665 -3.991 21.647 hybrid contribution 0.300 1.221 -0.522 1.362 sum 12.159 -16.444 -4.513 20.942 Atomic orbital electron populations 1.69945 1.06058 1.27050 1.49997 1.25005 0.94907 0.99348 0.94941 0.86506 0.79858 0.82947 0.78248 1.20518 1.21065 1.19722 1.20993 0.93063 0.89589 1.51733 0.92346 1.18483 0.92616 0.89521 0.98891 1.21024 0.93654 0.93206 0.91879 1.21144 0.98563 0.96619 0.98895 1.21159 0.94652 0.94660 0.96830 1.19441 1.03457 1.00061 0.95115 1.18581 0.80355 0.82214 0.82836 1.90723 1.57658 1.60895 1.31129 1.43489 1.39631 1.38808 1.10184 1.17811 0.90259 0.89332 0.96891 1.20939 0.95078 1.00841 1.00077 1.20920 0.97896 0.94674 0.98657 1.21125 0.99748 0.99742 0.95373 1.21079 0.94702 0.98076 0.98305 1.21370 1.00467 0.93055 0.99389 1.21128 0.96873 0.96495 0.95852 1.21059 0.98512 0.96687 0.98855 0.92676 0.94891 0.94841 0.85413 0.85494 0.75191 0.85710 0.85804 0.86149 0.85829 0.84238 0.86756 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.82 9.09 -34.44 -0.31 -14.13 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.04 1.01 5.10 -29.04 -0.15 0.86 16 10 C 0.00 0.05 5.08 -104.53 -0.53 -0.48 16 11 C -0.13 -2.48 9.68 -39.64 -0.38 -2.87 16 12 C -0.05 -0.92 9.60 -39.18 -0.38 -1.29 16 13 C -0.18 -2.81 5.87 -104.97 -0.62 -3.43 16 14 C 0.57 8.68 7.62 -12.35 -0.09 8.59 16 15 O -0.53 -9.35 13.78 5.31 0.07 -9.28 16 16 N -0.68 -8.22 5.28 -10.73 -0.06 -8.27 16 17 C 0.15 1.85 6.30 -83.72 -0.53 1.32 16 18 C -0.15 -1.50 9.97 -39.39 -0.39 -1.89 16 19 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 20 C -0.14 -1.28 10.04 -39.54 -0.40 -1.68 16 21 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 22 C -0.12 -1.56 8.70 -39.39 -0.34 -1.90 16 23 C -0.08 -1.24 9.54 -39.18 -0.37 -1.62 16 24 C -0.13 -2.32 9.68 -39.64 -0.38 -2.70 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 27 H 0.03 0.85 8.08 -51.92 -0.42 0.43 16 28 H 0.13 2.28 8.06 -52.48 -0.42 1.85 16 29 H 0.13 2.03 7.65 -52.49 -0.40 1.62 16 30 H 0.41 3.84 6.87 -40.82 -0.28 3.56 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.97 6.22 -52.49 -0.33 1.64 16 36 H 0.11 1.23 6.42 -52.49 -0.34 0.89 16 37 H 0.13 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -30.70 322.71 -9.44 -40.14 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.26 Total: 3.84 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -5.77 Total: -22.45 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.68 Total: -33.02 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.70 -9.44 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.800 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds