Wall clock time and date at job start Tue Mar 31 2020 05:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48495 * 109.47015 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.47051 * 29.99629 * 3 2 1 6 6 H 1.48504 * 109.46936 * 149.99620 * 3 2 1 7 7 C 1.37871 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47344 * 179.97438 * 9 7 2 11 11 C 1.38359 * 119.85539 * 89.99806 * 10 9 7 12 12 C 1.37956 * 120.15096 * 180.02562 * 11 10 9 13 13 C 1.39589 * 119.84991 * 0.02562 * 12 11 10 14 14 C 1.47807 * 120.14630 * 180.02562 * 13 12 11 15 15 O 1.21561 * 119.99993 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99951 * 180.27632 * 14 13 12 17 17 C 1.39851 * 120.00139 * 175.08663 * 16 14 13 18 18 C 1.38882 * 120.07602 * 214.82550 * 17 16 14 19 19 C 1.38105 * 119.92873 * 179.74806 * 18 17 16 20 20 C 1.38290 * 120.07347 * 0.52485 * 19 18 17 21 21 C 1.38288 * 120.14138 * 359.72454 * 20 19 18 22 22 C 1.38108 * 120.07157 * 0.02562 * 21 20 19 23 23 C 1.39593 * 119.70551 * 0.27879 * 13 12 11 24 24 C 1.37955 * 119.85200 * 359.42573 * 23 13 12 25 25 H 0.97004 * 120.00627 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47315 * 59.99687 * 9 7 2 27 27 H 1.09007 * 109.46670 * 299.99635 * 9 7 2 28 28 H 1.08005 * 119.92828 * 0.02562 * 11 10 9 29 29 H 1.07995 * 120.07584 * 180.02562 * 12 11 10 30 30 H 0.97001 * 120.00491 * 355.09229 * 16 14 13 31 31 H 1.08008 * 120.03938 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.96820 * 180.27601 * 19 18 17 33 33 H 1.07994 * 119.93225 * 179.70269 * 20 19 18 34 34 H 1.07995 * 119.96427 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03579 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.07078 * 179.72403 * 23 13 12 37 37 H 1.08004 * 119.92567 * 180.27558 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6780 -4.1680 1.2005 12 6 3.5749 -5.2161 1.2076 13 6 4.0313 -5.7483 0.0005 14 6 4.9918 -6.8717 0.0005 15 8 5.3858 -7.3346 1.0532 16 7 5.4348 -7.3796 -1.1667 17 6 6.4200 -8.3722 -1.1684 18 6 7.3702 -8.4079 -2.1807 19 6 8.3448 -9.3864 -2.1765 20 6 8.3688 -10.3364 -1.1718 21 6 7.4210 -10.3066 -0.1653 22 6 6.4468 -9.3278 -0.1608 23 6 3.5805 -5.2113 -1.2066 24 6 2.6789 -4.1671 -1.1995 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.3245 -3.7551 2.1338 29 1 3.9232 -5.6241 2.1450 30 1 5.0704 -7.0566 -2.0056 31 1 7.3492 -7.6692 -2.9683 32 1 9.0868 -9.4121 -2.9609 33 1 9.1291 -11.1033 -1.1735 34 1 7.4422 -11.0502 0.6177 35 1 5.7066 -9.3053 0.6253 36 1 3.9332 -5.6155 -2.1439 37 1 2.3260 -3.7537 -2.1327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:48 Heat of formation + Delta-G solvation = -8.534466 kcal Electronic energy + Delta-G solvation = -19887.047387 eV Core-core repulsion = 16785.911832 eV Total energy + Delta-G solvation = -3101.135556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78029 -40.11397 -39.04640 -35.94495 -35.47989 -33.31461 -31.94260 -31.80099 -30.64896 -29.02008 -25.91623 -24.18643 -23.65830 -23.38570 -22.47393 -21.17663 -19.37068 -18.52981 -18.29279 -17.24999 -16.84249 -16.44736 -16.25940 -15.93346 -15.83139 -15.23216 -15.01775 -14.57436 -14.52974 -14.28171 -14.22746 -13.81605 -13.54848 -13.31243 -13.07818 -12.64902 -12.61218 -12.45912 -12.17765 -11.90970 -11.61623 -11.57858 -11.40792 -10.93728 -10.61689 -9.90933 -9.84704 -9.65719 -9.10917 -8.22574 -6.35334 -0.18620 0.42699 0.47521 0.49057 1.40412 1.41304 1.52413 1.77899 1.96559 2.39328 2.86948 2.97327 3.09637 3.58404 3.88834 4.02406 4.04986 4.10154 4.25232 4.32950 4.47662 4.54360 4.56216 4.62528 4.65048 4.91450 5.00260 5.13670 5.26100 5.30374 5.32618 5.38436 5.41495 5.47376 5.57281 5.64328 5.72064 5.94439 5.95999 6.11152 6.15090 6.34559 6.77197 7.00886 7.33608 8.87078 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.002914 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.959195 B = 9605.299891 C = 9874.244816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.050 3.950 10 C -0.026 4.026 11 C -0.142 4.142 12 C -0.058 4.058 13 C -0.172 4.172 14 C 0.569 3.431 15 O -0.557 6.557 16 N -0.659 5.659 17 C 0.124 3.876 18 C -0.147 4.147 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.112 4.112 22 C -0.148 4.148 23 C -0.064 4.064 24 C -0.137 4.137 25 H 0.266 0.734 26 H 0.014 0.986 27 H 0.007 0.993 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.425 0.575 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.599 -18.581 -6.779 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.026 4.026 11 C -0.160 4.160 12 C -0.077 4.077 13 C -0.175 4.175 14 C 0.360 3.640 15 O -0.436 6.436 16 N -0.305 5.305 17 C 0.030 3.970 18 C -0.167 4.167 19 C -0.121 4.121 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.168 4.168 23 C -0.083 4.083 24 C -0.155 4.155 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.026 0.974 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.265 0.735 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.180 0.820 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.690 -18.746 -6.041 24.570 hybrid contribution -0.484 1.373 0.075 1.457 sum 14.206 -17.373 -5.966 23.222 Atomic orbital electron populations 1.70062 1.07593 1.28027 1.51073 1.25877 0.95730 1.02993 0.94548 0.85467 0.78548 0.78557 0.78631 1.19497 1.20673 1.19215 1.21327 0.93119 0.91013 1.51247 0.92605 1.18218 0.92976 0.90859 0.96634 1.20727 0.94663 0.93427 0.93825 1.21079 0.99268 0.97361 0.98288 1.21219 0.94329 0.94211 0.97946 1.19656 1.02871 0.99832 0.95161 1.18447 0.80210 0.82000 0.83373 1.90721 1.58727 1.61733 1.32465 1.43266 1.39232 1.38273 1.09710 1.18030 0.91318 0.89607 0.98005 1.21237 0.94337 1.01477 0.99648 1.21362 0.97880 0.93736 0.99109 1.21514 0.99452 1.00148 0.94459 1.21313 0.94540 0.97883 0.99360 1.21350 1.01190 0.94751 0.99527 1.21460 0.94811 0.94643 0.97342 1.21166 0.98955 0.97364 0.98005 0.92503 0.96776 0.97448 0.85937 0.84907 0.73535 0.83439 0.82708 0.83364 0.84489 0.86688 0.81993 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 13.29 21.44 0.28 -54.09 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.53 -29.08 9.09 25.60 0.23 -28.84 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.05 2.54 5.10 29.10 0.15 2.69 16 10 C -0.03 -1.08 5.08 -19.81 -0.10 -1.18 16 11 C -0.14 -5.41 9.68 22.23 0.22 -5.19 16 12 C -0.06 -1.97 9.60 22.53 0.22 -1.76 16 13 C -0.17 -5.22 5.87 -20.09 -0.12 -5.34 16 14 C 0.57 16.68 7.62 86.77 0.66 17.34 16 15 O -0.56 -19.78 13.78 -3.91 -0.05 -19.83 16 16 N -0.66 -14.57 5.28 -306.13 -1.62 -16.18 16 17 C 0.12 2.80 6.30 38.17 0.24 3.04 16 18 C -0.15 -2.46 9.97 22.39 0.22 -2.23 16 19 C -0.10 -1.43 10.04 22.25 0.22 -1.20 16 20 C -0.14 -2.03 10.04 22.29 0.22 -1.81 16 21 C -0.11 -2.15 10.04 22.25 0.22 -1.93 16 22 C -0.15 -3.67 8.70 22.40 0.19 -3.47 16 23 C -0.06 -1.73 9.54 22.53 0.21 -1.51 16 24 C -0.14 -4.66 9.68 22.23 0.22 -4.44 16 25 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.01 0.74 8.08 -2.39 -0.02 0.73 16 27 H 0.01 0.39 8.08 -2.38 -0.02 0.38 16 28 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.13 4.30 7.65 -2.91 -0.02 4.27 16 30 H 0.42 6.47 6.87 -92.71 -0.64 5.83 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.12 3.36 6.22 -2.91 -0.02 3.34 16 36 H 0.16 2.74 6.42 -2.91 -0.02 2.73 16 37 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -68.65 322.71 4.57 -64.08 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.45 Total: 15.80 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.48 Total: -34.99 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.33 Total: -70.27 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.65 4.57 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.542 kcal (2) G-P(sol) polarization free energy of solvation -68.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds