Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32779 * 123.45714 * 2 1 4 4 S 1.75502 * 110.57266 * 179.73600 * 3 2 1 5 5 C 1.70446 * 92.44759 * 359.97438 * 4 3 2 6 6 C 1.36003 * 110.81730 * 0.02562 * 5 4 3 7 7 C 1.47189 * 123.46226 * 180.02562 * 6 5 4 8 8 O 1.21637 * 120.00598 * 231.95138 * 7 6 5 9 9 N 1.34776 * 119.99719 * 51.95566 * 7 6 5 10 10 C 1.46502 * 120.00065 * 184.86686 * 9 7 6 11 11 C 1.50703 * 109.47033 * 89.99919 * 10 9 7 12 12 H 1.08000 * 119.99827 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99680 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00433 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99492 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47232 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46917 * 120.00263 * 15 13 11 18 18 H 1.48496 * 109.46813 * 239.99904 * 15 13 11 19 19 C 1.46503 * 120.00348 * 4.86747 * 9 7 6 20 20 C 1.52997 * 109.46957 * 83.93215 * 19 9 7 21 21 C 1.52996 * 109.47262 * 65.00497 * 20 19 9 22 22 C 1.52997 * 109.46988 * 185.00337 * 20 19 9 23 23 H 1.08995 * 109.47304 * 90.01764 * 1 2 3 24 24 H 1.08993 * 109.47079 * 210.02325 * 1 2 3 25 25 H 1.09004 * 109.46887 * 330.02106 * 1 2 3 26 26 H 1.07990 * 124.71113 * 359.75725 * 3 2 1 27 27 H 1.08003 * 124.59226 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47278 * 210.00008 * 10 9 7 29 29 H 1.08999 * 109.47046 * 330.00091 * 10 9 7 30 30 H 0.96996 * 119.99900 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47461 * 203.93889 * 19 9 7 32 32 H 1.09001 * 109.46789 * 323.93565 * 19 9 7 33 33 H 1.09000 * 109.47230 * 305.00306 * 20 19 9 34 34 H 1.08999 * 109.47628 * 179.97438 * 21 20 19 35 35 H 1.09002 * 109.47336 * 300.00219 * 21 20 19 36 36 H 1.09000 * 109.47154 * 59.99762 * 21 20 19 37 37 H 1.09001 * 109.47518 * 59.99873 * 22 20 19 38 38 H 1.09000 * 109.47604 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.47546 * 300.00315 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6411 -0.9598 0.0114 6 6 2.3033 -1.2049 0.0066 7 6 1.7263 -2.5589 0.0088 8 8 0.8941 -2.8669 -0.8232 9 7 2.1199 -3.4576 0.9329 10 6 1.6267 -4.8357 0.8711 11 6 2.5619 -5.6667 0.0309 12 1 3.4363 -5.2137 -0.4124 13 6 2.3010 -7.0054 -0.1719 14 7 1.2359 -7.5569 0.3675 15 14 3.4598 -8.0352 -1.2140 16 1 4.5737 -7.1841 -1.7038 17 1 4.0079 -9.1456 -0.3944 18 1 2.7185 -8.5946 -2.3728 19 6 3.0410 -3.0564 1.9992 20 6 2.2507 -2.4133 3.1405 21 6 1.3286 -3.4571 3.7738 22 6 3.2215 -1.8824 4.1972 23 1 -0.3633 -0.0003 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.8374 2.1102 -0.0038 27 1 4.4044 -1.7239 0.0161 28 1 1.5782 -5.2498 1.8783 29 1 0.6319 -4.8460 0.4258 30 1 1.0526 -8.4987 0.2251 31 1 3.5693 -3.9338 2.3722 32 1 3.7610 -2.3386 1.6062 33 1 1.6530 -1.5898 2.7498 34 1 0.7659 -2.9991 4.5873 35 1 0.6370 -3.8355 3.0211 36 1 1.9263 -4.2806 4.1646 37 1 3.8785 -1.1388 3.7461 38 1 2.6586 -1.4246 5.0106 39 1 3.8193 -2.7058 4.5879 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094205491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = -18.071600 kcal Electronic energy + Delta-G solvation = -20652.279387 eV Core-core repulsion = 17686.174221 eV Total energy + Delta-G solvation = -2966.105166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63023 -37.01742 -36.18596 -33.56267 -32.36474 -30.98600 -28.10111 -27.12006 -26.82561 -25.63887 -24.00432 -22.39538 -20.22974 -19.70930 -17.93070 -17.31337 -16.47108 -16.07001 -15.62033 -14.55889 -14.44746 -14.22197 -13.92054 -13.67596 -13.29181 -13.03038 -12.74863 -12.52613 -12.17118 -12.08253 -11.98170 -11.93222 -11.68036 -11.47216 -11.27040 -10.98205 -10.90972 -10.86444 -10.64201 -10.47604 -10.28407 -10.12233 -9.57833 -9.01672 -8.68730 -8.43238 -8.14952 -7.59657 -6.04531 -4.09243 1.05030 1.70250 2.03994 2.40062 3.29134 3.36910 3.40638 3.62610 4.02479 4.45274 4.85698 5.04324 5.17176 5.22934 5.28415 5.31881 5.43060 5.51049 5.61673 5.76928 5.82799 5.88213 5.93418 5.97562 6.08672 6.12753 6.18673 6.22415 6.34338 6.38177 6.55536 6.61455 6.70566 7.11479 7.45552 7.56909 7.92433 8.23796 8.42816 8.89342 9.08783 9.55932 11.03310 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.005865 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.644370 B = 4772.959587 C = 5247.083197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.059 4.059 3 C -0.242 4.242 4 S 0.148 5.852 5 C -0.216 4.216 6 C -0.127 4.127 7 C 0.568 3.432 8 O -0.533 6.533 9 N -0.586 5.586 10 C 0.245 3.755 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.109 3.891 20 C -0.111 4.111 21 C -0.146 4.146 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.164 0.836 27 H 0.170 0.830 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 16.705 5.641 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C -0.377 4.377 4 S 0.415 5.585 5 C -0.352 4.352 6 C -0.144 4.144 7 C 0.352 3.648 8 O -0.411 6.411 9 N -0.316 5.316 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.016 4.016 20 C -0.131 4.131 21 C -0.203 4.203 22 C -0.200 4.200 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.181 0.819 27 H 0.188 0.812 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.066 17.197 5.225 18.674 hybrid contribution -0.510 -1.640 -0.582 1.814 sum 4.556 15.557 4.643 16.862 Atomic orbital electron populations 1.20460 0.89154 1.02489 1.02940 1.19858 0.97163 0.90201 0.99845 1.25147 0.96293 1.02164 1.14084 1.82776 1.05969 0.97953 1.71844 1.25504 0.99668 1.01589 1.08484 1.20477 0.92354 0.95196 1.06397 1.17525 0.82126 0.83151 0.82005 1.90771 1.32836 1.79291 1.38213 1.48114 1.45532 1.12263 1.25708 1.19379 0.96075 0.74266 0.97680 1.21492 1.09475 0.94067 1.31568 0.92508 1.24919 0.95477 0.97748 0.95869 1.69936 1.26179 1.12612 1.44529 0.86467 0.80829 0.80068 0.80214 1.19852 1.20947 1.20863 1.21731 0.92023 1.00117 0.87688 1.21540 0.97326 0.98360 0.95887 1.21860 0.99652 0.98453 1.00329 1.21756 0.99094 1.00719 0.98384 0.90600 0.91051 0.91719 0.81874 0.81221 0.94374 0.93856 0.92770 0.89955 0.91237 0.91590 0.93614 0.91656 0.92592 0.92938 0.92896 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.72 36.01 0.35 -0.91 16 2 C -0.06 -0.87 6.01 -104.06 -0.63 -1.49 16 3 C -0.24 -2.90 10.91 28.86 0.31 -2.58 16 4 S 0.15 1.67 23.02 -107.50 -2.48 -0.80 16 5 C -0.22 -3.15 8.70 29.93 0.26 -2.89 16 6 C -0.13 -2.19 4.86 -104.63 -0.51 -2.69 16 7 C 0.57 12.37 6.66 -12.63 -0.08 12.29 16 8 O -0.53 -13.84 16.30 5.24 0.09 -13.75 16 9 N -0.59 -12.54 2.18 -176.41 -0.39 -12.93 16 10 C 0.24 6.35 4.28 -5.19 -0.02 6.33 16 11 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 15 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.11 1.84 4.61 -4.04 -0.02 1.82 16 20 C -0.11 -1.62 3.07 -90.62 -0.28 -1.90 16 21 C -0.15 -2.25 8.35 37.16 0.31 -1.94 16 22 C -0.14 -1.64 9.19 37.16 0.34 -1.29 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.07 1.12 7.62 -51.93 -0.40 0.73 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 26 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.17 2.39 7.20 -52.48 -0.38 2.01 16 28 H 0.04 0.99 6.68 -51.93 -0.35 0.64 16 29 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 32 H 0.07 1.05 4.46 -51.93 -0.23 0.82 16 33 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.19 6.36 -51.93 -0.33 0.86 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -32.18 333.62 -8.23 -40.41 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.82 Total: -0.26 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.38 Total: -8.84 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.35 Total: -38.67 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.48 Total: -0.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.18 -8.23 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094205491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.334 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds