Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46897 * 2 1 4 4 C 1.37466 * 122.45158 * 265.01654 * 3 2 1 5 5 C 1.36652 * 113.30003 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45731 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00039 * 352.14422 * 6 5 4 8 8 N 1.34778 * 119.99834 * 172.14379 * 6 5 4 9 9 C 1.46491 * 120.00231 * 181.95172 * 8 6 5 10 10 C 1.52999 * 109.46897 * 85.09040 * 9 8 6 11 11 C 1.46510 * 119.99831 * 1.95478 * 8 6 5 12 12 C 1.50699 * 109.47071 * 82.22678 * 11 8 6 13 13 H 1.08011 * 119.99841 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00288 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99779 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00409 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47357 * 89.99779 * 16 14 12 18 18 H 1.48498 * 109.46724 * 210.00088 * 16 14 12 19 19 H 1.48501 * 109.46730 * 329.99503 * 16 14 12 20 20 S 1.75830 * 109.07934 * 0.02562 * 5 4 3 21 21 C 1.33825 * 122.44714 * 84.73400 * 3 2 1 22 22 C 1.50699 * 124.52276 * 0.02562 * 21 3 2 23 23 H 1.08994 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47427 * 300.00485 * 1 2 3 25 25 H 1.09008 * 109.47057 * 59.99905 * 1 2 3 26 26 H 1.08996 * 109.47008 * 239.99776 * 2 1 3 27 27 H 1.09002 * 109.46684 * 119.99919 * 2 1 3 28 28 H 1.08005 * 123.34830 * 0.02588 * 4 3 2 29 29 H 1.09001 * 109.47487 * 205.09072 * 9 8 6 30 30 H 1.09006 * 109.47344 * 325.09166 * 9 8 6 31 31 H 1.09001 * 109.47727 * 299.99899 * 10 9 8 32 32 H 1.09000 * 109.47258 * 60.00300 * 10 9 8 33 33 H 1.09009 * 109.46981 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46679 * 202.22314 * 11 8 6 35 35 H 1.08996 * 109.47090 * 322.22566 * 11 8 6 36 36 H 0.96998 * 120.00354 * 179.97438 * 15 14 12 37 37 H 1.08990 * 109.47067 * 89.99804 * 22 21 3 38 38 H 1.08999 * 109.46911 * 210.00266 * 22 21 3 39 39 H 1.09002 * 109.47115 * 329.99856 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3731 2.0827 -1.1556 5 6 2.8044 3.3612 -0.9391 6 6 3.2334 4.3014 -1.9787 7 8 3.3598 3.9216 -3.1281 8 7 3.4878 5.5864 -1.6617 9 6 3.8751 6.5360 -2.7077 10 6 2.6189 7.1038 -3.3715 11 6 3.3771 6.0335 -0.2709 12 6 4.6435 5.6889 0.4698 13 1 5.4503 5.1874 -0.0442 14 6 4.7727 6.0147 1.8032 15 7 3.7909 6.6267 2.4287 16 14 6.3427 5.5882 2.7212 17 1 7.3035 6.7148 2.6087 18 1 6.0290 5.3461 4.1523 19 1 6.9435 4.3645 2.1322 20 16 2.7638 3.6971 0.7863 21 6 2.1738 2.1323 1.1246 22 6 1.8579 1.6187 2.5057 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.3059 1.6369 -2.1371 29 1 4.4512 7.3488 -2.2655 30 1 4.4819 6.0254 -3.4555 31 1 2.0426 6.2911 -3.8138 32 1 2.0120 7.6144 -2.6238 33 1 2.9070 7.8101 -4.1502 34 1 3.2246 7.1125 -0.2472 35 1 2.5315 5.5364 0.2043 36 1 3.8815 6.8556 3.3669 37 1 2.7466 1.1542 2.9326 38 1 1.5418 2.4482 3.1382 39 1 1.0565 0.8823 2.4449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -22.907573 kcal Electronic energy + Delta-G solvation = -20469.039565 eV Core-core repulsion = 17502.724696 eV Total energy + Delta-G solvation = -2966.314869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.11160 -37.86727 -35.21844 -33.07938 -32.41038 -31.12834 -30.39233 -27.28175 -26.46231 -23.58108 -23.28126 -23.22658 -21.35218 -18.82851 -17.52603 -17.18030 -16.65583 -15.67761 -15.17413 -14.63988 -14.55730 -13.95493 -13.78194 -13.59266 -13.13085 -12.92486 -12.71238 -12.48672 -12.20788 -12.18518 -12.06519 -11.77232 -11.63871 -11.43012 -11.12412 -11.05490 -10.87281 -10.76938 -10.67130 -10.53958 -10.22290 -9.94075 -9.19640 -9.05085 -8.76604 -7.99560 -7.62814 -7.40145 -6.37712 -4.40043 1.40732 2.59145 3.03061 3.06878 3.15443 3.21788 3.26846 3.90467 4.04489 4.22010 4.96410 5.26320 5.32052 5.43610 5.53881 5.65343 5.70146 5.75005 5.79278 5.85764 5.91209 6.03097 6.07754 6.12815 6.20436 6.21362 6.33016 6.38581 6.48579 6.53911 6.62376 6.71692 6.92468 7.07668 7.22966 7.42564 7.58979 7.76675 8.22223 8.61137 8.99035 9.20575 10.66371 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.008693 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.611100 B = 3220.315047 C = 4852.645768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.074 4.074 5 C -0.293 4.293 6 C 0.591 3.409 7 O -0.569 6.569 8 N -0.598 5.598 9 C 0.119 3.881 10 C -0.165 4.165 11 C 0.226 3.774 12 C -0.537 4.537 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.268 1.268 20 S 0.397 5.603 21 C -0.297 4.297 22 C -0.076 4.076 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.270 0.730 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -5.220 -0.860 6.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.109 4.109 5 C -0.415 4.415 6 C 0.380 3.620 7 O -0.452 6.452 8 N -0.328 5.328 9 C -0.004 4.004 10 C -0.223 4.223 11 C 0.104 3.896 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.130 4.130 15 N -0.513 5.513 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.193 1.193 20 S 0.676 5.324 21 C -0.416 4.416 22 C -0.134 4.134 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.089 -4.074 -0.300 5.780 hybrid contribution 0.525 -1.417 -0.214 1.526 sum -3.565 -5.491 -0.514 6.566 Atomic orbital electron populations 1.21734 0.95717 1.00642 1.02060 1.20122 0.95289 0.92835 1.01610 1.18279 1.07562 0.97541 0.91735 1.20190 0.99637 0.92384 0.98651 1.24590 1.17162 1.00177 0.99533 1.17026 0.76821 0.81443 0.86676 1.90686 1.55621 1.78193 1.20665 1.48069 1.66400 1.08112 1.10241 1.21243 0.96342 0.92343 0.90494 1.22132 0.99024 1.00794 1.00372 1.19680 0.97146 0.97132 0.75670 1.21522 1.01424 1.39528 0.95385 0.91319 1.24898 0.96815 0.94102 0.97176 1.69907 1.31475 1.38503 1.11455 0.86575 0.83200 0.79464 0.79114 1.20145 1.20626 1.19262 1.85977 1.50350 1.00592 0.95518 1.25584 1.08782 1.08080 0.99187 1.20203 1.01190 1.00617 0.91371 0.93230 0.92780 0.92750 0.91924 0.91914 0.84989 0.90297 0.91043 0.92599 0.92639 0.92290 0.92986 0.94083 0.92003 0.91738 0.91861 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.82 37.16 0.37 -1.43 16 2 C -0.06 -0.84 5.54 -27.88 -0.15 -0.99 16 3 C -0.14 -2.46 5.04 -106.45 -0.54 -2.99 16 4 C -0.07 -1.46 9.79 -40.44 -0.40 -1.85 16 5 C -0.29 -6.37 6.23 -36.79 -0.23 -6.60 16 6 C 0.59 13.57 7.53 -12.89 -0.10 13.47 16 7 O -0.57 -13.91 16.50 5.19 0.09 -13.82 16 8 N -0.60 -12.96 2.49 -176.64 -0.44 -13.40 16 9 C 0.12 2.20 6.06 -4.05 -0.02 2.17 16 10 C -0.16 -2.63 10.20 37.16 0.38 -2.25 16 11 C 0.23 5.18 4.72 -5.19 -0.02 5.15 16 12 C -0.54 -13.08 6.94 -34.44 -0.24 -13.32 16 13 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 14 C 0.08 1.85 5.02 -17.82 -0.09 1.76 16 15 N -0.88 -21.80 13.29 55.43 0.74 -21.06 16 16 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 S 0.40 8.28 15.80 -107.50 -1.70 6.58 16 21 C -0.30 -5.39 6.28 -35.86 -0.23 -5.61 16 22 C -0.08 -1.13 9.71 36.01 0.35 -0.78 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.68 7.21 -51.93 -0.37 0.30 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.06 0.84 8.10 -51.93 -0.42 0.41 16 27 H 0.06 0.82 7.47 -51.93 -0.39 0.43 16 28 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 29 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 30 H 0.07 1.34 7.55 -51.93 -0.39 0.94 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 35 H 0.04 0.98 4.50 -22.39 -0.10 0.88 16 36 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -26.90 330.24 -8.05 -34.95 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.77 Total: 0.66 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.92 Total: -13.27 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.30 Total: -34.46 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 8.28 SS G_CDS: -1.70 Total: 6.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.90 -8.05 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.043 kcal (2) G-P(sol) polarization free energy of solvation -26.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds