Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.46835 * 2 1 4 4 S 1.70620 * 124.52372 * 269.97570 * 3 2 1 5 5 C 1.75832 * 91.56556 * 180.02562 * 4 3 2 6 6 C 1.46581 * 125.46056 * 179.97438 * 5 4 3 7 7 O 1.21694 * 120.00404 * 171.91820 * 6 5 4 8 8 N 1.34779 * 119.99850 * 351.91884 * 6 5 4 9 9 C 1.46500 * 120.00049 * 182.03107 * 8 6 5 10 10 C 1.53001 * 109.47223 * 85.08988 * 9 8 6 11 11 C 1.46505 * 120.00036 * 2.03194 * 8 6 5 12 12 C 1.50700 * 109.46941 * 82.24254 * 11 8 6 13 13 H 1.07994 * 120.00092 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99605 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00120 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99952 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47242 * 119.99541 * 16 14 12 19 19 H 1.48496 * 109.47205 * 239.99555 * 16 14 12 20 20 C 1.36653 * 109.08079 * 359.76349 * 5 4 3 21 21 C 1.33817 * 124.52649 * 90.00183 * 3 2 1 22 22 C 1.50699 * 122.44350 * 359.95724 * 21 3 2 23 23 H 1.09006 * 109.47201 * 299.99625 * 1 2 3 24 24 H 1.09004 * 109.47841 * 60.00226 * 1 2 3 25 25 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46837 * 240.00324 * 2 1 3 27 27 H 1.08994 * 109.47170 * 120.00125 * 2 1 3 28 28 H 1.09002 * 109.46959 * 205.09257 * 9 8 6 29 29 H 1.09002 * 109.46937 * 325.09184 * 9 8 6 30 30 H 1.09003 * 109.46866 * 299.99898 * 10 9 8 31 31 H 1.09002 * 109.47209 * 59.99724 * 10 9 8 32 32 H 1.08998 * 109.46990 * 180.02562 * 10 9 8 33 33 H 1.08993 * 109.46781 * 202.24432 * 11 8 6 34 34 H 1.09000 * 109.46811 * 322.24119 * 11 8 6 35 35 H 0.97001 * 120.00086 * 180.02562 * 15 14 12 36 36 H 1.07995 * 123.35147 * 180.24439 * 20 5 4 37 37 H 1.09000 * 109.47794 * 90.00135 * 22 21 3 38 38 H 1.09000 * 109.47474 * 329.99867 * 22 21 3 39 39 H 1.09007 * 109.46852 * 209.99884 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3551 2.3323 -1.4057 5 6 2.8471 3.7232 -0.4492 6 6 3.3025 5.0079 -0.9883 7 8 3.4795 5.9527 -0.2420 8 7 3.5251 5.1429 -2.3107 9 6 4.0227 6.4135 -2.8438 10 6 5.5484 6.4500 -2.7342 11 6 3.2695 4.0190 -3.2151 12 6 1.8018 3.9706 -3.5538 13 1 1.1271 4.7039 -3.1375 14 6 1.3205 2.9901 -4.3952 15 7 2.1423 2.0974 -4.9026 16 14 -0.4985 2.9305 -4.8157 17 1 -1.2035 4.0382 -4.1220 18 1 -0.6723 3.0749 -6.2834 19 1 -1.0660 1.6307 -4.3756 20 6 2.7325 3.4160 0.8775 21 6 2.2850 2.1359 1.1025 22 6 2.0877 1.5803 2.4894 23 1 -0.3634 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7313 6.5076 -3.8899 29 1 3.5975 7.2386 -2.2725 30 1 5.8398 6.3559 -1.6880 31 1 5.9736 5.6248 -3.3055 32 1 5.9185 7.3955 -3.1304 33 1 3.8492 4.1488 -4.1288 34 1 3.5611 3.0880 -2.7290 35 1 1.8038 1.4078 -5.4948 36 1 2.9724 4.1091 1.6702 37 1 3.0088 1.1033 2.8243 38 1 1.2824 0.8458 2.4754 39 1 1.8291 2.3901 3.1717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = -23.138562 kcal Electronic energy + Delta-G solvation = -20551.295930 eV Core-core repulsion = 17584.971045 eV Total energy + Delta-G solvation = -2966.324886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.10138 -37.75787 -35.21164 -33.33126 -32.96588 -30.89414 -29.50494 -27.22617 -26.80621 -24.48771 -23.23378 -22.33144 -21.40381 -18.94300 -17.52432 -17.17442 -16.66179 -15.67205 -15.25906 -14.59077 -14.46560 -14.07622 -13.74599 -13.54152 -13.18574 -12.85126 -12.65088 -12.47391 -12.29273 -12.17032 -11.91785 -11.78552 -11.67034 -11.39151 -11.14118 -11.05798 -10.87618 -10.80245 -10.64306 -10.54891 -10.22067 -9.91787 -9.20259 -9.06014 -8.77254 -8.00459 -7.63669 -7.38932 -6.37910 -4.40028 1.40470 2.59006 3.03514 3.06910 3.14356 3.21977 3.27251 3.90510 4.04386 4.21823 4.96251 5.22548 5.36627 5.38962 5.59375 5.63569 5.74482 5.77599 5.80943 5.85825 5.95719 5.98232 6.08492 6.17829 6.20965 6.24848 6.33665 6.38974 6.49656 6.53837 6.62355 6.70860 6.92459 7.07177 7.23447 7.42564 7.58965 7.76642 8.22122 8.61464 8.98861 9.20548 10.66205 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.009911 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.299783 B = 2824.518326 C = 4651.636003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.295 4.295 4 S 0.398 5.602 5 C -0.293 4.293 6 C 0.591 3.409 7 O -0.569 6.569 8 N -0.598 5.598 9 C 0.119 3.881 10 C -0.165 4.165 11 C 0.226 3.774 12 C -0.536 4.536 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.876 5.876 16 Si 0.889 3.111 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.277 1.277 20 C -0.076 4.076 21 C -0.141 4.141 22 C -0.087 4.087 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.270 0.730 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -2.772 5.468 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.414 4.414 4 S 0.677 5.323 5 C -0.414 4.414 6 C 0.380 3.620 7 O -0.451 6.451 8 N -0.328 5.328 9 C -0.004 4.004 10 C -0.223 4.223 11 C 0.104 3.896 12 C -0.578 4.578 13 H 0.087 0.913 14 C -0.130 4.130 15 N -0.513 5.513 16 Si 0.716 3.284 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.111 4.111 21 C -0.154 4.154 22 C -0.145 4.145 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.764 -2.812 4.149 5.070 hybrid contribution -0.925 0.139 1.205 1.526 sum -0.161 -2.673 5.354 5.987 Atomic orbital electron populations 1.21778 0.95133 1.01119 1.02418 1.19915 0.95588 0.90907 1.02061 1.25594 1.08849 1.02659 1.04306 1.85967 1.51802 0.97238 0.97277 1.24608 1.17203 1.01135 0.98491 1.17025 0.76739 0.86251 0.81968 1.90683 1.55365 1.40432 1.58668 1.48072 1.63511 1.14640 1.06602 1.21246 0.93417 0.86345 0.99416 1.22132 0.96761 1.01323 1.02108 1.19681 0.97495 0.82964 0.89496 1.21559 0.92988 1.14193 1.29061 0.91265 1.24898 0.98381 0.94920 0.94801 1.69915 1.34917 1.15555 1.30903 0.86536 0.84640 0.78690 0.78575 1.19245 1.20493 1.20280 1.20199 1.00403 0.95681 0.94832 1.18306 1.07259 0.94309 0.95501 1.20394 1.00920 1.00178 0.93053 0.92672 0.92304 0.92777 0.91369 0.91352 0.90291 0.91040 0.92599 0.92636 0.92284 0.92985 0.94112 0.92059 0.84954 0.92482 0.92352 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 37.16 0.37 -1.69 16 2 C -0.05 -0.69 5.72 -27.89 -0.16 -0.85 16 3 C -0.29 -5.35 5.53 -35.86 -0.20 -5.55 16 4 S 0.40 8.30 15.80 -107.50 -1.70 6.61 16 5 C -0.29 -6.37 6.23 -36.79 -0.23 -6.60 16 6 C 0.59 13.59 7.53 -12.90 -0.10 13.49 16 7 O -0.57 -13.92 16.50 5.19 0.09 -13.83 16 8 N -0.60 -12.97 2.49 -176.64 -0.44 -13.41 16 9 C 0.12 2.20 6.06 -4.04 -0.02 2.17 16 10 C -0.16 -2.63 10.20 37.16 0.38 -2.25 16 11 C 0.23 5.18 4.72 -5.19 -0.02 5.15 16 12 C -0.54 -13.06 6.94 -34.44 -0.24 -13.30 16 13 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.08 1.84 5.01 -17.82 -0.09 1.75 16 15 N -0.88 -21.76 13.29 55.43 0.74 -21.02 16 16 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.08 -1.51 9.80 -40.43 -0.40 -1.91 16 21 C -0.14 -2.52 5.78 -106.46 -0.62 -3.13 16 22 C -0.09 -1.22 9.55 36.01 0.34 -0.87 16 23 H 0.05 0.75 7.80 -51.93 -0.41 0.34 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.91 7.25 -51.93 -0.38 0.53 16 28 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 29 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 34 H 0.04 0.98 4.50 -22.39 -0.10 0.88 16 35 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 36 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.75 6.86 -51.93 -0.36 0.39 16 39 H 0.06 0.74 8.13 -51.92 -0.42 0.32 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -26.91 331.23 -8.14 -35.05 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.81 Total: 0.85 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.98 Total: -13.59 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.30 Total: -34.43 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -1.70 Total: 6.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.91 -8.14 -35.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.910 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds