Wall clock time and date at job start Tue Mar 31 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.46835 * 2 1 4 4 S 1.70620 * 124.52372 * 269.97570 * 3 2 1 5 5 C 1.75832 * 91.56556 * 180.02562 * 4 3 2 6 6 C 1.46581 * 125.46056 * 179.97438 * 5 4 3 7 7 O 1.21694 * 120.00404 * 171.91820 * 6 5 4 8 8 N 1.34779 * 119.99850 * 351.91884 * 6 5 4 9 9 C 1.46500 * 120.00049 * 182.03107 * 8 6 5 10 10 C 1.53001 * 109.47223 * 85.08988 * 9 8 6 11 11 C 1.46505 * 120.00036 * 2.03194 * 8 6 5 12 12 C 1.50700 * 109.46941 * 82.24254 * 11 8 6 13 13 H 1.07994 * 120.00092 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99605 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00120 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99952 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47242 * 119.99541 * 16 14 12 19 19 H 1.48496 * 109.47205 * 239.99555 * 16 14 12 20 20 C 1.36653 * 109.08079 * 359.76349 * 5 4 3 21 21 C 1.33817 * 124.52649 * 90.00183 * 3 2 1 22 22 C 1.50699 * 122.44350 * 359.95724 * 21 3 2 23 23 H 1.09006 * 109.47201 * 299.99625 * 1 2 3 24 24 H 1.09004 * 109.47841 * 60.00226 * 1 2 3 25 25 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46837 * 240.00324 * 2 1 3 27 27 H 1.08994 * 109.47170 * 120.00125 * 2 1 3 28 28 H 1.09002 * 109.46959 * 205.09257 * 9 8 6 29 29 H 1.09002 * 109.46937 * 325.09184 * 9 8 6 30 30 H 1.09003 * 109.46866 * 299.99898 * 10 9 8 31 31 H 1.09002 * 109.47209 * 59.99724 * 10 9 8 32 32 H 1.08998 * 109.46990 * 180.02562 * 10 9 8 33 33 H 1.08993 * 109.46781 * 202.24432 * 11 8 6 34 34 H 1.09000 * 109.46811 * 322.24119 * 11 8 6 35 35 H 0.97001 * 120.00086 * 180.02562 * 15 14 12 36 36 H 1.07995 * 123.35147 * 180.24439 * 20 5 4 37 37 H 1.09000 * 109.47794 * 90.00135 * 22 21 3 38 38 H 1.09000 * 109.47474 * 329.99867 * 22 21 3 39 39 H 1.09007 * 109.46852 * 209.99884 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3551 2.3323 -1.4057 5 6 2.8471 3.7232 -0.4492 6 6 3.3025 5.0079 -0.9883 7 8 3.4795 5.9527 -0.2420 8 7 3.5251 5.1429 -2.3107 9 6 4.0227 6.4135 -2.8438 10 6 5.5484 6.4500 -2.7342 11 6 3.2695 4.0190 -3.2151 12 6 1.8018 3.9706 -3.5538 13 1 1.1271 4.7039 -3.1375 14 6 1.3205 2.9901 -4.3952 15 7 2.1423 2.0974 -4.9026 16 14 -0.4985 2.9305 -4.8157 17 1 -1.2035 4.0382 -4.1220 18 1 -0.6723 3.0749 -6.2834 19 1 -1.0660 1.6307 -4.3756 20 6 2.7325 3.4160 0.8775 21 6 2.2850 2.1359 1.1025 22 6 2.0877 1.5803 2.4894 23 1 -0.3634 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7313 6.5076 -3.8899 29 1 3.5975 7.2386 -2.2725 30 1 5.8398 6.3559 -1.6880 31 1 5.9736 5.6248 -3.3055 32 1 5.9185 7.3955 -3.1304 33 1 3.8492 4.1488 -4.1288 34 1 3.5611 3.0880 -2.7290 35 1 1.8038 1.4078 -5.4948 36 1 2.9724 4.1091 1.6702 37 1 3.0088 1.1033 2.8243 38 1 1.2824 0.8458 2.4754 39 1 1.8291 2.3901 3.1717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:08 Heat of formation + Delta-G solvation = -35.967902 kcal Electronic energy + Delta-G solvation = -20551.852252 eV Core-core repulsion = 17584.971045 eV Total energy + Delta-G solvation = -2966.881207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81877 -39.22501 -36.96966 -34.90101 -34.52604 -32.40984 -30.85506 -29.02230 -28.11916 -25.96098 -25.05150 -23.68307 -22.84321 -20.53174 -19.05112 -18.90321 -18.46714 -17.29845 -16.81111 -16.35774 -16.13608 -15.51098 -15.08440 -14.94523 -14.57027 -14.41697 -14.29162 -14.03144 -13.78981 -13.43340 -13.33064 -13.21219 -12.93615 -12.87637 -12.73524 -12.70425 -12.36533 -12.21188 -12.06640 -11.87942 -11.83244 -11.76347 -10.98692 -10.64780 -10.57109 -9.70783 -9.21024 -8.98289 -8.24132 -6.31185 -0.17715 0.98801 1.36740 1.43716 1.51522 1.52739 1.56774 2.23426 2.34812 2.43475 3.07680 3.77272 3.95800 4.20064 4.23287 4.35951 4.42847 4.47505 4.50339 4.59581 4.61008 4.71878 4.86747 4.91190 4.94672 4.98034 5.02333 5.06179 5.09085 5.12765 5.22977 5.27901 5.36552 5.60613 5.64553 5.78502 5.82254 5.91271 6.43881 6.72121 7.21338 7.33291 8.80098 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.009911 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.299783 B = 2824.518326 C = 4651.636003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C -0.278 4.278 4 S 0.349 5.651 5 C -0.323 4.323 6 C 0.582 3.418 7 O -0.594 6.594 8 N -0.600 5.600 9 C 0.110 3.890 10 C -0.153 4.153 11 C 0.236 3.764 12 C -0.542 4.542 13 H 0.049 0.951 14 C 0.051 3.949 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.269 1.269 20 C -0.071 4.071 21 C -0.144 4.144 22 C -0.084 4.084 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.273 0.727 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -4.140 6.554 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.398 4.398 4 S 0.626 5.374 5 C -0.444 4.444 6 C 0.373 3.627 7 O -0.479 6.479 8 N -0.329 5.329 9 C -0.012 4.012 10 C -0.211 4.211 11 C 0.113 3.887 12 C -0.583 4.583 13 H 0.067 0.933 14 C -0.153 4.153 15 N -0.532 5.532 16 Si 0.757 3.243 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.107 4.107 21 C -0.155 4.155 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.264 -4.168 5.203 6.671 hybrid contribution -0.761 0.530 0.972 1.344 sum -0.498 -3.638 6.175 7.184 Atomic orbital electron populations 1.21767 0.94089 1.02732 1.01621 1.20085 0.96387 0.88834 1.03402 1.25837 1.07352 1.03899 1.02693 1.85953 1.53651 0.98255 0.99502 1.24647 1.19273 1.01046 0.99405 1.17306 0.76599 0.86610 0.82214 1.90644 1.56841 1.41297 1.59140 1.48174 1.63145 1.15328 1.06268 1.21488 0.95203 0.84885 0.99624 1.22032 0.94615 1.03189 1.01299 1.19496 0.96623 0.83481 0.89133 1.21448 0.93320 1.14050 1.29479 0.93304 1.25300 1.00873 0.94540 0.94604 1.69958 1.36002 1.15924 1.31320 0.85883 0.81450 0.78538 0.78397 1.20149 1.19938 1.19452 1.20517 0.99253 0.96729 0.94214 1.18691 1.05962 0.93328 0.97567 1.20477 1.02453 1.00949 0.90414 0.92064 0.94518 0.90007 0.91439 0.88565 0.89379 0.91581 0.94155 0.92561 0.88966 0.93931 0.94314 0.91737 0.84386 0.90778 0.90611 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.89 71.98 0.71 -2.91 16 2 C -0.05 -1.32 5.72 29.85 0.17 -1.15 16 3 C -0.28 -9.66 5.53 24.68 0.14 -9.52 16 4 S 0.35 14.67 15.80 -56.49 -0.89 13.78 16 5 C -0.32 -14.26 6.23 24.08 0.15 -14.11 16 6 C 0.58 27.51 7.53 86.42 0.65 28.16 16 7 O -0.59 -29.79 16.50 -4.33 -0.07 -29.86 16 8 N -0.60 -26.73 2.49 -830.98 -2.07 -28.80 16 9 C 0.11 4.12 6.06 86.38 0.52 4.65 16 10 C -0.15 -4.82 10.20 71.98 0.73 -4.08 16 11 C 0.24 11.07 4.72 85.63 0.40 11.47 16 12 C -0.54 -27.00 6.94 25.60 0.18 -26.82 16 13 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 14 C 0.05 2.49 5.01 84.66 0.42 2.91 16 15 N -0.89 -44.58 13.29 21.45 0.28 -44.30 16 16 Si 0.93 39.61 29.54 68.60 2.03 41.64 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 C -0.07 -2.78 9.80 21.72 0.21 -2.57 16 21 C -0.14 -4.83 5.78 -21.05 -0.12 -4.95 16 22 C -0.08 -2.05 9.55 71.24 0.68 -1.37 16 23 H 0.06 1.46 7.80 -2.38 -0.02 1.44 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 2.14 7.25 -2.39 -0.02 2.12 16 28 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 29 H 0.07 2.52 7.54 -2.39 -0.02 2.51 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 2.05 8.01 -2.39 -0.02 2.03 16 34 H 0.04 1.91 4.50 -21.17 -0.10 1.82 16 35 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 36 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.59 6.86 -2.39 -0.02 1.58 16 39 H 0.07 1.51 8.13 -2.38 -0.02 1.49 16 Total: -1.00 -58.03 331.23 5.08 -52.95 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.94 Total: 14.89 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.86 Total: -20.30 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.78 Total: -73.10 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.07 Total: -29.86 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 16 Polarization: 14.67 SS G_CDS: -0.89 Total: 13.78 kcal Total: -58.03 5.08 -52.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.984 kcal (2) G-P(sol) polarization free energy of solvation -58.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds