Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37474 * 122.44674 * 2 1 4 4 C 1.36646 * 113.29787 * 180.02562 * 3 2 1 5 5 C 1.46582 * 125.46341 * 180.02562 * 4 3 2 6 6 O 1.21705 * 119.99428 * 352.24805 * 5 4 3 7 7 N 1.34778 * 120.00440 * 172.24368 * 5 4 3 8 8 C 1.46503 * 119.99684 * 2.12219 * 7 5 4 9 9 C 1.50700 * 109.47420 * 82.24332 * 8 7 5 10 10 H 1.08000 * 119.99309 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99863 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00127 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47460 * 90.00019 * 13 11 9 15 15 H 1.48502 * 109.47358 * 210.00370 * 13 11 9 16 16 H 1.48501 * 109.47274 * 329.99990 * 13 11 9 17 17 C 1.46490 * 120.00082 * 182.11483 * 7 5 4 18 18 C 1.52994 * 109.47172 * 124.79893 * 17 7 5 19 19 C 1.53004 * 109.47430 * 244.80505 * 17 7 5 20 20 S 1.75835 * 109.08216 * 359.97438 * 4 3 2 21 21 C 1.33818 * 122.45335 * 180.02562 * 2 1 3 22 22 C 1.50702 * 124.51714 * 0.24670 * 21 2 1 23 23 H 1.08999 * 109.46962 * 269.97472 * 1 2 3 24 24 H 1.09000 * 109.47204 * 29.98042 * 1 2 3 25 25 H 1.09005 * 109.46892 * 149.97401 * 1 2 3 26 26 H 1.07997 * 123.35511 * 0.02562 * 3 2 1 27 27 H 1.08995 * 109.46639 * 202.24926 * 8 7 5 28 28 H 1.08996 * 109.46753 * 322.24242 * 8 7 5 29 29 H 0.96995 * 120.00363 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.47405 * 4.79753 * 17 7 5 31 31 H 1.08999 * 109.47261 * 60.00126 * 18 17 7 32 32 H 1.09006 * 109.47133 * 179.97438 * 18 17 7 33 33 H 1.08993 * 109.47480 * 300.00096 * 18 17 7 34 34 H 1.09001 * 109.47181 * 59.99549 * 19 17 7 35 35 H 1.08997 * 109.47163 * 180.02562 * 19 17 7 36 36 H 1.09003 * 109.46212 * 299.99979 * 19 17 7 37 37 H 1.09004 * 109.46705 * 179.72172 * 22 21 2 38 38 H 1.08994 * 109.47384 * 299.71926 * 22 21 2 39 39 H 1.09001 * 109.47488 * 59.72502 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9429 -0.0006 5 6 4.6231 1.9863 -0.0002 6 8 4.3069 3.1531 -0.1415 7 7 5.9198 1.6538 0.1567 8 6 6.3051 0.2458 0.2803 9 6 6.4014 -0.3710 -1.0914 10 1 6.1965 0.2264 -1.9675 11 6 6.7520 -1.6974 -1.2277 12 7 7.0020 -2.4245 -0.1608 13 14 6.8720 -2.4617 -2.9279 14 1 8.2540 -2.3003 -3.4468 15 1 6.5398 -3.9067 -2.8457 16 1 5.9176 -1.7857 -3.8430 17 6 6.9438 2.7003 0.2036 18 6 7.7581 2.5598 1.4912 19 6 7.8720 2.5602 -1.0047 20 16 3.8970 -0.7891 -0.0003 21 6 2.2251 -1.1292 -0.0005 22 6 1.6356 -2.5161 -0.0065 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.8019 2.1452 0.0004 27 1 7.2719 0.1761 0.7787 28 1 5.5552 -0.2860 0.8659 29 1 7.2483 -3.3578 -0.2567 30 1 6.4645 3.6790 0.1818 31 1 8.2375 1.5811 1.5130 32 1 8.5204 3.3382 1.5258 33 1 7.0969 2.6597 2.3519 34 1 7.2918 2.6603 -1.9221 35 1 8.6342 3.3385 -0.9696 36 1 8.3513 1.5814 -0.9829 37 1 2.4393 -3.2525 -0.0106 38 1 1.0214 -2.6537 0.8834 39 1 1.0198 -2.6454 -0.8966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112204170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -19.137249 kcal Electronic energy + Delta-G solvation = -20722.809058 eV Core-core repulsion = 17756.657682 eV Total energy + Delta-G solvation = -2966.151376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23080 -37.64494 -35.68076 -33.33748 -31.95192 -30.91502 -29.07044 -27.43223 -26.68858 -25.39783 -23.25814 -22.94156 -20.58268 -18.63874 -17.52955 -17.22141 -16.72125 -15.55657 -15.19983 -14.59076 -14.36119 -13.88627 -13.80116 -13.41263 -12.99424 -12.54958 -12.48730 -12.47012 -12.43460 -12.15842 -12.00983 -11.77318 -11.60885 -11.26288 -11.15489 -11.08290 -11.01416 -10.80020 -10.76426 -10.45012 -10.05314 -9.81011 -9.19523 -9.06406 -8.74929 -7.99025 -7.62022 -7.38758 -6.35956 -4.37121 1.40533 2.59333 3.02623 3.06803 3.15714 3.22472 3.27595 3.87066 4.04794 4.22509 4.98020 5.32061 5.44173 5.54116 5.65503 5.65994 5.77541 5.82655 5.85534 5.91850 6.00524 6.08848 6.12655 6.13905 6.21520 6.34746 6.36880 6.39856 6.58790 6.65068 6.72925 6.92897 6.98954 7.06833 7.23042 7.46604 7.61209 7.79767 8.24388 8.63585 8.99503 9.22735 10.68243 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.009531 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.651647 B = 2937.027765 C = 4523.466351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.145 4.145 3 C -0.076 4.076 4 C -0.293 4.293 5 C 0.591 3.409 6 O -0.571 6.571 7 N -0.592 5.592 8 C 0.226 3.774 9 C -0.531 4.531 10 H 0.069 0.931 11 C 0.075 3.925 12 N -0.878 5.878 13 Si 0.888 3.112 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.138 3.862 18 C -0.160 4.160 19 C -0.154 4.154 20 S 0.400 5.600 21 C -0.301 4.301 22 C -0.072 4.072 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.133 0.867 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 1.075 1.928 4.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C -0.111 4.111 4 C -0.414 4.414 5 C 0.381 3.619 6 O -0.454 6.454 7 N -0.323 5.323 8 C 0.103 3.897 9 C -0.573 4.573 10 H 0.087 0.913 11 C -0.130 4.130 12 N -0.514 5.514 13 Si 0.715 3.285 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.193 1.193 17 C 0.035 3.965 18 C -0.218 4.218 19 C -0.212 4.212 20 S 0.678 5.322 21 C -0.420 4.420 22 C -0.130 4.130 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.936 0.512 1.947 3.560 hybrid contribution -1.223 0.273 -0.986 1.594 sum -4.159 0.785 0.962 4.340 Atomic orbital electron populations 1.20373 0.91515 1.01514 1.01019 1.18317 0.96420 0.91660 1.09369 1.20200 0.91226 0.98650 1.00986 1.24591 0.97398 0.99510 1.19913 1.17038 0.81949 0.86946 0.75998 1.90679 1.82073 1.19433 1.53239 1.48103 1.05004 1.09111 1.70061 1.19644 0.97078 0.75074 0.97887 1.21511 1.47466 0.95756 0.92581 0.91310 1.24886 0.94199 0.96774 0.97176 1.69901 1.44538 1.08546 1.28445 0.86605 0.78979 0.78685 0.84246 1.20223 1.20701 1.19306 1.20861 0.88663 0.92073 0.94943 1.22141 0.99827 1.02530 0.97256 1.22087 0.98832 1.02531 0.97758 1.85945 0.92056 0.94928 1.59267 1.25607 1.07543 0.99104 1.09774 1.20152 1.00138 0.91243 1.01512 0.92447 0.92497 0.92470 0.84939 0.92619 0.94297 0.92069 0.89392 0.91530 0.92141 0.92854 0.92783 0.93057 0.90765 0.91944 0.91792 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.84 36.01 0.35 -0.85 16 2 C -0.15 -2.62 5.78 -106.45 -0.62 -3.23 16 3 C -0.08 -1.51 9.80 -40.44 -0.40 -1.91 16 4 C -0.29 -6.37 6.23 -36.79 -0.23 -6.60 16 5 C 0.59 13.58 7.56 -12.89 -0.10 13.49 16 6 O -0.57 -14.02 16.19 5.18 0.08 -13.94 16 7 N -0.59 -12.72 2.38 -169.04 -0.40 -13.12 16 8 C 0.23 5.07 4.06 -5.19 -0.02 5.05 16 9 C -0.53 -12.68 6.13 -34.44 -0.21 -12.90 16 10 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 11 C 0.08 1.81 5.03 -17.82 -0.09 1.72 16 12 N -0.88 -21.61 13.29 55.43 0.74 -20.87 16 13 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 C 0.14 2.56 3.24 -67.94 -0.22 2.34 16 18 C -0.16 -2.52 9.10 37.15 0.34 -2.18 16 19 C -0.15 -2.69 8.96 37.16 0.33 -2.35 16 20 S 0.40 8.35 15.81 -107.50 -1.70 6.65 16 21 C -0.30 -5.52 6.28 -35.86 -0.23 -5.75 16 22 C -0.07 -1.08 9.38 36.01 0.34 -0.74 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.06 0.73 7.26 -51.93 -0.38 0.35 16 26 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 27 H 0.06 1.28 6.20 -51.93 -0.32 0.96 16 28 H 0.04 0.93 4.47 -22.18 -0.10 0.83 16 29 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.09 1.69 6.92 -51.93 -0.36 1.33 16 31 H 0.07 1.10 6.50 -51.93 -0.34 0.76 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.39 7.35 -51.93 -0.38 1.01 16 37 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -26.65 325.77 -7.77 -34.42 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.63 Total: 1.58 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.74 Total: -13.92 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.33 Total: -33.99 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -1.70 Total: 6.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.65 -7.77 -34.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.279 kcal (2) G-P(sol) polarization free energy of solvation -26.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds