Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37474 * 122.44674 * 2 1 4 4 C 1.36646 * 113.29787 * 180.02562 * 3 2 1 5 5 C 1.46582 * 125.46341 * 180.02562 * 4 3 2 6 6 O 1.21705 * 119.99428 * 352.24805 * 5 4 3 7 7 N 1.34778 * 120.00440 * 172.24368 * 5 4 3 8 8 C 1.46503 * 119.99684 * 2.12219 * 7 5 4 9 9 C 1.50700 * 109.47420 * 82.24332 * 8 7 5 10 10 H 1.08000 * 119.99309 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99863 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00127 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47460 * 90.00019 * 13 11 9 15 15 H 1.48502 * 109.47358 * 210.00370 * 13 11 9 16 16 H 1.48501 * 109.47274 * 329.99990 * 13 11 9 17 17 C 1.46490 * 120.00082 * 182.11483 * 7 5 4 18 18 C 1.52994 * 109.47172 * 124.79893 * 17 7 5 19 19 C 1.53004 * 109.47430 * 244.80505 * 17 7 5 20 20 S 1.75835 * 109.08216 * 359.97438 * 4 3 2 21 21 C 1.33818 * 122.45335 * 180.02562 * 2 1 3 22 22 C 1.50702 * 124.51714 * 0.24670 * 21 2 1 23 23 H 1.08999 * 109.46962 * 269.97472 * 1 2 3 24 24 H 1.09000 * 109.47204 * 29.98042 * 1 2 3 25 25 H 1.09005 * 109.46892 * 149.97401 * 1 2 3 26 26 H 1.07997 * 123.35511 * 0.02562 * 3 2 1 27 27 H 1.08995 * 109.46639 * 202.24926 * 8 7 5 28 28 H 1.08996 * 109.46753 * 322.24242 * 8 7 5 29 29 H 0.96995 * 120.00363 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.47405 * 4.79753 * 17 7 5 31 31 H 1.08999 * 109.47261 * 60.00126 * 18 17 7 32 32 H 1.09006 * 109.47133 * 179.97438 * 18 17 7 33 33 H 1.08993 * 109.47480 * 300.00096 * 18 17 7 34 34 H 1.09001 * 109.47181 * 59.99549 * 19 17 7 35 35 H 1.08997 * 109.47163 * 180.02562 * 19 17 7 36 36 H 1.09003 * 109.46212 * 299.99979 * 19 17 7 37 37 H 1.09004 * 109.46705 * 179.72172 * 22 21 2 38 38 H 1.08994 * 109.47384 * 299.71926 * 22 21 2 39 39 H 1.09001 * 109.47488 * 59.72502 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9429 -0.0006 5 6 4.6231 1.9863 -0.0002 6 8 4.3069 3.1531 -0.1415 7 7 5.9198 1.6538 0.1567 8 6 6.3051 0.2458 0.2803 9 6 6.4014 -0.3710 -1.0914 10 1 6.1965 0.2264 -1.9675 11 6 6.7520 -1.6974 -1.2277 12 7 7.0020 -2.4245 -0.1608 13 14 6.8720 -2.4617 -2.9279 14 1 8.2540 -2.3003 -3.4468 15 1 6.5398 -3.9067 -2.8457 16 1 5.9176 -1.7857 -3.8430 17 6 6.9438 2.7003 0.2036 18 6 7.7581 2.5598 1.4912 19 6 7.8720 2.5602 -1.0047 20 16 3.8970 -0.7891 -0.0003 21 6 2.2251 -1.1292 -0.0005 22 6 1.6356 -2.5161 -0.0065 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.8019 2.1452 0.0004 27 1 7.2719 0.1761 0.7787 28 1 5.5552 -0.2860 0.8659 29 1 7.2483 -3.3578 -0.2567 30 1 6.4645 3.6790 0.1818 31 1 8.2375 1.5811 1.5130 32 1 8.5204 3.3382 1.5258 33 1 7.0969 2.6597 2.3519 34 1 7.2918 2.6603 -1.9221 35 1 8.6342 3.3385 -0.9696 36 1 8.3513 1.5814 -0.9829 37 1 2.4393 -3.2525 -0.0106 38 1 1.0214 -2.6537 0.8834 39 1 1.0198 -2.6454 -0.8966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112204170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -32.032854 kcal Electronic energy + Delta-G solvation = -20723.368253 eV Core-core repulsion = 17756.657682 eV Total energy + Delta-G solvation = -2966.710571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93394 -39.12537 -37.37866 -35.08413 -33.56972 -32.38452 -30.31739 -29.23294 -28.06289 -26.80827 -25.07020 -24.43935 -22.08905 -20.21144 -19.11384 -18.87779 -18.54304 -17.21316 -16.75425 -16.35477 -16.02285 -15.39294 -15.12851 -14.87588 -14.61215 -14.30449 -13.96251 -13.85546 -13.68812 -13.53237 -13.41902 -13.21022 -12.99537 -12.83762 -12.69091 -12.54063 -12.45065 -12.34581 -12.28048 -12.13248 -11.69203 -11.54279 -10.96608 -10.63373 -10.57075 -9.67991 -9.18364 -8.98423 -8.20533 -6.25678 -0.17889 0.99120 1.38396 1.44934 1.50912 1.51516 1.56609 2.22232 2.35540 2.44346 3.11415 3.75672 4.08551 4.12769 4.24246 4.36842 4.40758 4.48127 4.63167 4.70748 4.76597 4.79775 4.80398 4.84577 4.93916 4.96935 5.02049 5.07863 5.11969 5.15536 5.20760 5.37209 5.45056 5.61381 5.67688 5.80611 5.85373 5.96814 6.47901 6.76366 7.23079 7.37144 8.83659 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.009531 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.651647 B = 2937.027765 C = 4523.466351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.149 4.149 3 C -0.072 4.072 4 C -0.323 4.323 5 C 0.581 3.419 6 O -0.598 6.598 7 N -0.592 5.592 8 C 0.236 3.764 9 C -0.531 4.531 10 H 0.048 0.952 11 C 0.050 3.950 12 N -0.896 5.896 13 Si 0.930 3.070 14 H -0.275 1.275 15 H -0.274 1.274 16 H -0.276 1.276 17 C 0.127 3.873 18 C -0.150 4.150 19 C -0.144 4.144 20 S 0.352 5.648 21 C -0.287 4.287 22 C -0.074 4.074 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.272 0.728 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 0.486 1.966 5.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.161 4.161 3 C -0.108 4.108 4 C -0.443 4.443 5 C 0.372 3.628 6 O -0.484 6.484 7 N -0.322 5.322 8 C 0.114 3.886 9 C -0.572 4.572 10 H 0.067 0.933 11 C -0.154 4.154 12 N -0.534 5.534 13 Si 0.755 3.245 14 H -0.200 1.200 15 H -0.199 1.199 16 H -0.201 1.201 17 C 0.024 3.976 18 C -0.207 4.207 19 C -0.202 4.202 20 S 0.629 5.371 21 C -0.407 4.407 22 C -0.132 4.132 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.012 -0.080 1.986 4.477 hybrid contribution -0.993 0.487 -0.977 1.476 sum -5.005 0.407 1.009 5.122 Atomic orbital electron populations 1.20455 0.88197 1.02961 1.02541 1.18712 0.98708 0.90555 1.08100 1.20518 0.90827 0.99809 0.99621 1.24639 0.97965 0.99501 1.22228 1.17339 0.82668 0.87002 0.75827 1.90638 1.82530 1.20330 1.54868 1.48218 1.05293 1.09378 1.69284 1.19448 0.96492 0.75535 0.97160 1.21375 1.47710 0.95819 0.92332 0.93327 1.25263 0.94019 0.96888 0.99182 1.69946 1.45212 1.08772 1.29431 0.85970 0.78654 0.78305 0.81523 1.20018 1.19909 1.20134 1.21155 0.88524 0.90959 0.96932 1.22064 1.00017 1.03207 0.95437 1.21996 0.99000 1.02869 0.96319 1.85927 0.94950 0.95034 1.61195 1.25888 1.05679 1.01132 1.07976 1.20303 1.00542 0.88723 1.03614 0.90770 0.91524 0.90651 0.84425 0.93400 0.94674 0.91865 0.90044 0.92407 0.88809 0.93088 0.94682 0.89480 0.92335 0.92176 0.89350 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 9.84 71.24 0.70 -1.34 16 2 C -0.15 -5.07 5.78 -21.05 -0.12 -5.19 16 3 C -0.07 -2.83 9.80 21.72 0.21 -2.62 16 4 C -0.32 -14.27 6.23 24.08 0.15 -14.12 16 5 C 0.58 27.47 7.56 86.42 0.65 28.12 16 6 O -0.60 -30.14 16.19 -4.37 -0.07 -30.21 16 7 N -0.59 -26.12 2.38 -806.95 -1.92 -28.04 16 8 C 0.24 10.91 4.06 85.63 0.35 11.26 16 9 C -0.53 -25.94 6.13 25.60 0.16 -25.78 16 10 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 11 C 0.05 2.43 5.03 84.66 0.43 2.85 16 12 N -0.90 -44.29 13.29 21.45 0.28 -44.01 16 13 Si 0.93 39.51 29.54 68.60 2.03 41.54 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.13 4.74 3.24 44.99 0.15 4.89 16 18 C -0.15 -4.61 9.10 71.98 0.65 -3.96 16 19 C -0.14 -5.01 8.96 71.98 0.64 -4.36 16 20 S 0.35 14.79 15.81 -56.49 -0.89 13.90 16 21 C -0.29 -10.03 6.28 24.68 0.15 -9.88 16 22 C -0.07 -1.97 9.38 71.24 0.67 -1.31 16 23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 25 H 0.07 1.59 7.26 -2.38 -0.02 1.58 16 26 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 27 H 0.05 2.27 6.20 -2.39 -0.01 2.25 16 28 H 0.04 1.73 4.47 -21.31 -0.10 1.64 16 29 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 30 H 0.08 3.15 6.92 -2.39 -0.02 3.14 16 31 H 0.06 1.89 6.50 -2.39 -0.02 1.87 16 32 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.21 7.35 -2.39 -0.02 2.20 16 37 H 0.06 1.64 8.11 -2.38 -0.02 1.63 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 1.95 7.88 -2.39 -0.02 1.93 16 Total: -1.00 -57.70 325.77 5.18 -52.52 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.95 Total: 15.74 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 4.79 Total: -21.44 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.63 Total: -72.04 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.07 Total: -30.21 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 14.79 SS G_CDS: -0.89 Total: 13.90 kcal Total: -57.70 5.18 -52.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.487 kcal (2) G-P(sol) polarization free energy of solvation -57.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds