Wall clock time and date at job start Tue Mar 31 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99458 * 3 2 1 5 5 H 1.48500 * 109.47462 * 29.99593 * 3 2 1 6 6 H 1.48498 * 109.47057 * 150.00174 * 3 2 1 7 7 C 1.40124 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 155.03346 * 7 2 1 9 9 C 1.46173 * 120.00218 * 335.03364 * 7 2 1 10 10 O 1.21744 * 119.99735 * 236.47855 * 9 7 2 11 11 N 1.34776 * 120.00162 * 56.47692 * 9 7 2 12 12 C 1.46503 * 119.99600 * 354.57894 * 11 9 7 13 13 C 1.50704 * 109.46854 * 247.84382 * 12 11 9 14 14 C 1.38232 * 119.99985 * 161.93498 * 13 12 11 15 15 C 1.38238 * 120.00288 * 179.76678 * 14 13 12 16 16 C 1.38237 * 119.99414 * 0.50516 * 15 14 13 17 17 C 1.38230 * 120.00279 * 359.74887 * 16 15 14 18 18 C 1.38234 * 120.00228 * 342.20838 * 13 12 11 19 19 C 1.39523 * 119.99935 * 174.58407 * 11 9 7 20 20 C 1.39026 * 120.08342 * 178.29970 * 19 11 9 21 21 C 1.38064 * 119.92123 * 180.27070 * 20 19 11 22 22 C 1.38331 * 120.07949 * 359.97438 * 21 20 19 23 23 C 1.38329 * 120.16900 * 0.03862 * 22 21 20 24 24 C 1.38067 * 120.08247 * 359.96468 * 23 22 21 25 25 H 0.96999 * 119.99983 * 350.24278 * 1 2 3 26 26 H 1.08994 * 109.47481 * 7.84395 * 12 11 9 27 27 H 1.08998 * 109.47158 * 127.84979 * 12 11 9 28 28 H 1.08004 * 119.99806 * 359.97438 * 14 13 12 29 29 H 1.08000 * 120.00027 * 180.22379 * 15 14 13 30 30 H 1.08000 * 119.99482 * 179.72198 * 16 15 14 31 31 H 1.08003 * 119.99765 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.99967 * 359.97438 * 18 13 12 33 33 H 1.08008 * 120.04197 * 0.25020 * 20 19 11 34 34 H 1.07997 * 119.95896 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.91563 * 180.02562 * 22 21 20 36 36 H 1.07996 * 119.95870 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.03896 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4379 2.6527 0.6999 6 1 3.5380 1.4401 0.7000 7 6 2.0069 -1.2136 0.0005 8 1 3.0113 -1.2575 -0.3942 9 6 1.3785 -2.4201 0.5354 10 8 1.9188 -3.0414 1.4321 11 7 0.2009 -2.8446 0.0359 12 6 -0.5075 -2.0348 -0.9585 13 6 -1.7775 -1.4942 -0.3536 14 6 -2.4214 -0.4218 -0.9419 15 6 -3.5890 0.0711 -0.3898 16 6 -4.1070 -0.5020 0.7566 17 6 -3.4603 -1.5711 1.3479 18 6 -2.2956 -2.0672 0.7928 19 6 -0.3435 -4.0551 0.4658 20 6 -1.5750 -4.4777 -0.0218 21 6 -2.1132 -5.6735 0.4102 22 6 -1.4284 -6.4511 1.3267 23 6 -0.2031 -6.0338 1.8144 24 6 0.3415 -4.8392 1.3871 25 1 -0.4850 0.8279 0.1424 26 1 0.1275 -1.2059 -1.2712 27 1 -0.7511 -2.6522 -1.8231 28 1 -2.0140 0.0290 -1.8348 29 1 -4.0939 0.9067 -0.8515 30 1 -5.0168 -0.1141 1.1905 31 1 -3.8649 -2.0185 2.2437 32 1 -1.7904 -2.9026 1.2547 33 1 -2.1102 -3.8711 -0.7375 34 1 -3.0700 -6.0021 0.0321 35 1 -1.8517 -7.3862 1.6625 36 1 0.3284 -6.6434 2.5301 37 1 1.2984 -4.5144 1.7680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117993428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:31 Heat of formation + Delta-G solvation = 73.809386 kcal Electronic energy + Delta-G solvation = -22343.044122 eV Core-core repulsion = 19245.479264 eV Total energy + Delta-G solvation = -3097.564858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16647 -38.06679 -37.23311 -34.79037 -33.37447 -30.78169 -30.38674 -29.65990 -29.11498 -26.47424 -25.17594 -22.60628 -21.72106 -21.31587 -20.62408 -19.50408 -17.27541 -16.66229 -16.01140 -15.77100 -15.17114 -14.95796 -14.44980 -14.03846 -13.80035 -13.61333 -13.24425 -12.88015 -12.73036 -12.55178 -12.51160 -12.17851 -11.78187 -11.54066 -11.21673 -11.02906 -10.78730 -10.71615 -10.51568 -10.40482 -10.31650 -10.10755 -9.23776 -8.80455 -8.27266 -8.04109 -7.88135 -7.68421 -6.88004 -6.52034 -4.94844 2.03050 2.13854 2.25751 2.27012 2.97963 3.11224 3.16823 3.89839 4.08790 4.22331 4.55219 4.63301 4.89366 5.50821 5.56923 5.59507 5.65339 5.71391 5.79246 5.93424 6.09173 6.15739 6.34342 6.36398 6.40395 6.52746 6.63620 6.72338 6.79871 6.97959 7.08123 7.11634 7.23695 7.30394 7.31695 7.33326 7.47833 7.55296 7.63115 7.85093 8.14436 8.24544 8.67739 8.83535 9.77758 10.13047 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.009089 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.963553 B = 3079.798315 C = 4596.656712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.079 3.921 3 Si 0.913 3.087 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.097 0.903 9 C 0.606 3.394 10 O -0.583 6.583 11 N -0.542 5.542 12 C 0.158 3.842 13 C 0.012 3.988 14 C -0.107 4.107 15 C -0.129 4.129 16 C -0.155 4.155 17 C -0.122 4.122 18 C -0.137 4.137 19 C 0.177 3.823 20 C -0.172 4.172 21 C -0.104 4.104 22 C -0.176 4.176 23 C -0.103 4.103 24 C -0.190 4.190 25 H 0.280 0.720 26 H 0.160 0.840 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -1.882 -2.618 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.132 4.132 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.115 0.885 9 C 0.410 3.590 10 O -0.468 6.468 11 N -0.260 5.260 12 C 0.036 3.964 13 C 0.009 3.991 14 C -0.126 4.126 15 C -0.147 4.147 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.155 4.155 19 C 0.078 3.922 20 C -0.193 4.193 21 C -0.123 4.123 22 C -0.196 4.196 23 C -0.122 4.122 24 C -0.209 4.209 25 H 0.094 0.906 26 H 0.176 0.824 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.455 -1.910 -2.334 7.124 hybrid contribution -0.107 0.910 0.225 0.944 sum -6.562 -1.000 -2.109 6.964 Atomic orbital electron populations 1.70297 1.06188 1.29605 1.39180 1.25698 0.94959 1.00722 0.91809 0.86247 0.80577 0.80554 0.78879 1.19693 1.20391 1.18807 1.20915 1.01405 0.91324 1.44922 0.88509 1.18658 0.76736 0.83844 0.79795 1.90153 1.64995 1.60151 1.31484 1.46158 1.22030 1.16921 1.40841 1.21179 0.92409 0.95206 0.87581 1.19779 0.92554 0.92850 0.93904 1.20619 0.94971 0.96374 1.00675 1.20875 0.96916 0.99992 0.96902 1.20781 1.00498 0.98445 0.97585 1.20920 0.96579 0.97203 0.99368 1.21526 0.96163 1.00999 0.96813 1.18327 0.92317 0.87278 0.94240 1.20945 0.95807 0.98188 1.04394 1.20708 0.99151 0.94402 0.98004 1.20887 0.96939 1.00446 1.01313 1.21076 0.95434 0.96346 0.99342 1.23066 1.04760 0.94325 0.98776 0.90633 0.82369 0.94670 0.87197 0.87664 0.87893 0.87846 0.85556 0.86113 0.87081 0.87553 0.87050 0.79790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.51 6.18 55.55 0.34 -18.17 16 2 C 0.08 1.82 4.73 -17.35 -0.08 1.74 16 3 Si 0.91 18.29 29.64 -169.99 -5.04 13.25 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.55 -13.81 8.55 -35.69 -0.31 -14.11 16 8 H 0.10 2.40 7.96 -52.48 -0.42 1.98 16 9 C 0.61 15.84 7.17 -13.08 -0.09 15.74 16 10 O -0.58 -16.24 13.50 5.15 0.07 -16.17 16 11 N -0.54 -12.59 2.48 -116.38 -0.29 -12.88 16 12 C 0.16 3.32 4.49 -5.19 -0.02 3.30 16 13 C 0.01 0.23 3.18 -104.62 -0.33 -0.10 16 14 C -0.11 -1.94 7.93 -39.58 -0.31 -2.26 16 15 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 16 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 17 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 18 C -0.14 -2.80 7.37 -39.58 -0.29 -3.09 16 19 C 0.18 3.87 4.66 -83.77 -0.39 3.48 16 20 C -0.17 -3.28 6.69 -39.35 -0.26 -3.54 16 21 C -0.10 -1.76 10.04 -39.61 -0.40 -2.16 16 22 C -0.18 -2.94 10.04 -39.51 -0.40 -3.34 16 23 C -0.10 -1.89 10.04 -39.61 -0.40 -2.29 16 24 C -0.19 -4.14 9.04 -39.35 -0.36 -4.50 16 25 H 0.28 6.16 7.70 -40.82 -0.31 5.84 16 26 H 0.16 3.53 4.04 -57.39 -0.23 3.29 16 27 H 0.04 0.68 7.59 -51.93 -0.39 0.29 16 28 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.13 2.80 4.00 -52.48 -0.21 2.59 16 33 H 0.12 2.24 5.51 -52.48 -0.29 1.95 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.19 4.50 4.51 -56.35 -0.25 4.24 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -26.26 294.91 -9.17 -35.43 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -3.87 Total: 13.43 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -4.84 Total: -19.34 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.05 Total: -31.04 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.04 Total: 13.25 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.26 -9.17 -35.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117993428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.244 kcal (2) G-P(sol) polarization free energy of solvation -26.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds