Wall clock time and date at job start Tue Mar 31 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99458 * 3 2 1 5 5 H 1.48500 * 109.47462 * 29.99593 * 3 2 1 6 6 H 1.48498 * 109.47057 * 150.00174 * 3 2 1 7 7 C 1.40124 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 155.03346 * 7 2 1 9 9 C 1.46173 * 120.00218 * 335.03364 * 7 2 1 10 10 O 1.21744 * 119.99735 * 236.47855 * 9 7 2 11 11 N 1.34776 * 120.00162 * 56.47692 * 9 7 2 12 12 C 1.46503 * 119.99600 * 354.57894 * 11 9 7 13 13 C 1.50704 * 109.46854 * 247.84382 * 12 11 9 14 14 C 1.38232 * 119.99985 * 161.93498 * 13 12 11 15 15 C 1.38238 * 120.00288 * 179.76678 * 14 13 12 16 16 C 1.38237 * 119.99414 * 0.50516 * 15 14 13 17 17 C 1.38230 * 120.00279 * 359.74887 * 16 15 14 18 18 C 1.38234 * 120.00228 * 342.20838 * 13 12 11 19 19 C 1.39523 * 119.99935 * 174.58407 * 11 9 7 20 20 C 1.39026 * 120.08342 * 178.29970 * 19 11 9 21 21 C 1.38064 * 119.92123 * 180.27070 * 20 19 11 22 22 C 1.38331 * 120.07949 * 359.97438 * 21 20 19 23 23 C 1.38329 * 120.16900 * 0.03862 * 22 21 20 24 24 C 1.38067 * 120.08247 * 359.96468 * 23 22 21 25 25 H 0.96999 * 119.99983 * 350.24278 * 1 2 3 26 26 H 1.08994 * 109.47481 * 7.84395 * 12 11 9 27 27 H 1.08998 * 109.47158 * 127.84979 * 12 11 9 28 28 H 1.08004 * 119.99806 * 359.97438 * 14 13 12 29 29 H 1.08000 * 120.00027 * 180.22379 * 15 14 13 30 30 H 1.08000 * 119.99482 * 179.72198 * 16 15 14 31 31 H 1.08003 * 119.99765 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.99967 * 359.97438 * 18 13 12 33 33 H 1.08008 * 120.04197 * 0.25020 * 20 19 11 34 34 H 1.07997 * 119.95896 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.91563 * 180.02562 * 22 21 20 36 36 H 1.07996 * 119.95870 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.03896 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4379 2.6527 0.6999 6 1 3.5380 1.4401 0.7000 7 6 2.0069 -1.2136 0.0005 8 1 3.0113 -1.2575 -0.3942 9 6 1.3785 -2.4201 0.5354 10 8 1.9188 -3.0414 1.4321 11 7 0.2009 -2.8446 0.0359 12 6 -0.5075 -2.0348 -0.9585 13 6 -1.7775 -1.4942 -0.3536 14 6 -2.4214 -0.4218 -0.9419 15 6 -3.5890 0.0711 -0.3898 16 6 -4.1070 -0.5020 0.7566 17 6 -3.4603 -1.5711 1.3479 18 6 -2.2956 -2.0672 0.7928 19 6 -0.3435 -4.0551 0.4658 20 6 -1.5750 -4.4777 -0.0218 21 6 -2.1132 -5.6735 0.4102 22 6 -1.4284 -6.4511 1.3267 23 6 -0.2031 -6.0338 1.8144 24 6 0.3415 -4.8392 1.3871 25 1 -0.4850 0.8279 0.1424 26 1 0.1275 -1.2059 -1.2712 27 1 -0.7511 -2.6522 -1.8231 28 1 -2.0140 0.0290 -1.8348 29 1 -4.0939 0.9067 -0.8515 30 1 -5.0168 -0.1141 1.1905 31 1 -3.8649 -2.0185 2.2437 32 1 -1.7904 -2.9026 1.2547 33 1 -2.1102 -3.8711 -0.7375 34 1 -3.0700 -6.0021 0.0321 35 1 -1.8517 -7.3862 1.6625 36 1 0.3284 -6.6434 2.5301 37 1 1.2984 -4.5144 1.7680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117993428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:31 Heat of formation + Delta-G solvation = 61.974066 kcal Electronic energy + Delta-G solvation = -22343.557340 eV Core-core repulsion = 19245.479264 eV Total energy + Delta-G solvation = -3098.078076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80295 -39.54919 -38.89388 -36.54458 -35.11533 -32.30429 -31.84266 -31.10666 -30.70622 -28.26154 -26.75916 -24.14812 -23.26861 -22.76527 -22.16932 -21.12080 -19.04473 -18.21348 -17.57979 -17.42695 -16.88337 -16.52380 -15.92039 -15.59879 -15.31018 -15.12850 -14.83462 -14.49861 -14.31237 -14.17555 -14.04552 -13.73392 -13.29719 -13.05813 -12.90758 -12.57189 -12.47241 -12.30535 -12.08221 -11.87578 -11.81414 -11.58457 -10.86488 -10.55912 -9.77499 -9.72345 -9.46377 -9.17779 -8.52391 -8.25101 -6.83073 0.54125 0.63925 0.82333 0.85466 1.37611 1.45733 1.55544 2.20971 2.29945 2.55059 2.86095 3.11865 3.26839 4.08256 4.18936 4.23747 4.29398 4.34005 4.42466 4.53995 4.65386 4.66819 4.82973 4.84193 4.98001 5.04065 5.12271 5.19194 5.37868 5.39189 5.48261 5.64434 5.66304 5.73700 5.84815 5.85468 5.89608 6.04563 6.12793 6.26459 6.43792 6.53751 6.82819 7.03721 7.88189 8.33173 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.009089 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.963553 B = 3079.798315 C = 4596.656712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.053 3.947 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.586 3.414 10 O -0.621 6.621 11 N -0.543 5.543 12 C 0.159 3.841 13 C -0.001 4.001 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.150 4.150 17 C -0.132 4.132 18 C -0.157 4.157 19 C 0.147 3.853 20 C -0.168 4.168 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.105 4.105 24 C -0.222 4.222 25 H 0.284 0.716 26 H 0.144 0.856 27 H 0.045 0.955 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -1.372 -3.065 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.158 4.158 3 Si 0.798 3.202 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.623 4.623 8 H 0.105 0.895 9 C 0.390 3.610 10 O -0.510 6.510 11 N -0.261 5.261 12 C 0.038 3.962 13 C -0.003 4.003 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.175 4.175 19 C 0.050 3.950 20 C -0.189 4.189 21 C -0.117 4.117 22 C -0.181 4.181 23 C -0.124 4.124 24 C -0.242 4.242 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.522 -1.423 -2.808 10.029 hybrid contribution 0.707 0.681 0.375 1.051 sum -8.815 -0.742 -2.433 9.175 Atomic orbital electron populations 1.70425 1.06580 1.30270 1.37115 1.26325 0.95884 1.02528 0.91050 0.85299 0.78582 0.76822 0.79454 1.17931 1.19718 1.20377 1.20963 1.01598 0.92512 1.47185 0.89542 1.18975 0.77860 0.84182 0.79950 1.90154 1.66397 1.61315 1.33085 1.45977 1.21556 1.17667 1.40865 1.21140 0.92675 0.94765 0.87637 1.19690 0.92328 0.93923 0.94347 1.20792 0.95599 0.95790 1.01052 1.21247 0.96068 1.00286 0.96507 1.21147 1.01125 0.97317 0.97228 1.21138 0.96088 0.97907 0.99920 1.21428 0.97309 1.01324 0.97476 1.18551 0.93785 0.87112 0.95519 1.21024 0.94581 0.99070 1.04203 1.21174 1.00274 0.93096 0.97132 1.21326 0.95576 1.01437 0.99769 1.21323 0.96417 0.95154 0.99483 1.22841 1.04380 0.96535 1.00472 0.90281 0.83917 0.93720 0.86265 0.84377 0.84753 0.86638 0.87866 0.85856 0.83318 0.83425 0.84875 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.91 6.18 21.85 0.13 -36.77 16 2 C 0.05 2.52 4.73 85.33 0.40 2.92 16 3 Si 0.98 37.74 29.64 68.60 2.03 39.78 16 4 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.59 -31.22 8.55 24.79 0.21 -31.01 16 8 H 0.09 4.60 7.96 -2.91 -0.02 4.58 16 9 C 0.59 32.83 7.17 86.30 0.62 33.45 16 10 O -0.62 -37.58 13.50 -4.49 -0.06 -37.64 16 11 N -0.54 -26.64 2.48 -640.32 -1.59 -28.23 16 12 C 0.16 6.89 4.49 85.63 0.38 7.28 16 13 C 0.00 -0.02 3.18 -19.87 -0.06 -0.09 16 14 C -0.11 -3.90 7.93 22.27 0.18 -3.73 16 15 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 16 C -0.15 -4.55 10.05 22.27 0.22 -4.33 16 17 C -0.13 -4.65 10.05 22.27 0.22 -4.43 16 18 C -0.16 -6.39 7.37 22.27 0.16 -6.23 16 19 C 0.15 6.71 4.66 38.30 0.18 6.89 16 20 C -0.17 -6.35 6.69 22.42 0.15 -6.20 16 21 C -0.10 -3.07 10.04 22.25 0.22 -2.85 16 22 C -0.16 -4.93 10.04 22.31 0.22 -4.70 16 23 C -0.11 -3.82 10.04 22.25 0.22 -3.59 16 24 C -0.22 -10.22 9.04 22.42 0.20 -10.01 16 25 H 0.28 12.21 7.70 -92.71 -0.71 11.50 16 26 H 0.14 6.59 4.04 -13.17 -0.05 6.53 16 27 H 0.04 1.79 7.59 -2.39 -0.02 1.77 16 28 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.10 4.69 4.00 -2.91 -0.01 4.68 16 33 H 0.12 4.54 5.51 -2.91 -0.02 4.52 16 34 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.15 8.06 4.51 -64.02 -0.29 7.77 16 Total: -1.00 -60.65 294.91 5.12 -55.53 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.83 Total: 37.42 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 3.77 Total: -30.08 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -1.45 Total: -65.00 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.06 Total: -37.64 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.78 kcal Total: -60.65 5.12 -55.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117993428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.503 kcal (2) G-P(sol) polarization free energy of solvation -60.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds