Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99721 * 2 1 4 4 C 1.50699 * 109.47086 * 269.99755 * 3 2 1 5 5 H 1.08004 * 120.00116 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00279 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99691 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00240 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47268 * 89.99411 * 8 6 4 10 10 H 1.48504 * 109.47212 * 209.99778 * 8 6 4 11 11 H 1.48506 * 109.47185 * 329.99586 * 8 6 4 12 12 C 1.34776 * 119.99948 * 179.97438 * 2 1 3 13 13 O 1.21701 * 119.99797 * 180.22258 * 12 2 1 14 14 C 1.46586 * 119.99721 * 0.21883 * 12 2 1 15 15 C 1.36651 * 125.45365 * 171.42395 * 14 12 2 16 16 C 1.37469 * 113.29372 * 179.73460 * 15 14 12 17 17 C 1.33810 * 115.10580 * 359.97438 * 16 15 14 18 18 C 1.50700 * 124.52585 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47011 * 60.00606 * 18 17 16 20 20 C 1.53003 * 109.47115 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47091 * 300.00185 * 18 17 16 22 22 S 1.70621 * 110.95409 * 0.02562 * 17 16 15 23 23 H 1.09001 * 109.47423 * 263.47632 * 1 2 3 24 24 H 1.09002 * 109.47300 * 23.47758 * 1 2 3 25 25 H 1.09001 * 109.47572 * 143.47433 * 1 2 3 26 26 H 1.08995 * 109.47421 * 29.99727 * 3 2 1 27 27 H 1.09006 * 109.47115 * 150.00359 * 3 2 1 28 28 H 0.97003 * 120.00017 * 180.02562 * 7 6 4 29 29 H 1.08002 * 123.35049 * 359.69711 * 15 14 12 30 30 H 1.08003 * 122.44826 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46834 * 59.99644 * 19 18 17 32 32 H 1.09000 * 109.47140 * 180.02562 * 19 18 17 33 33 H 1.09002 * 109.46806 * 300.00132 * 19 18 17 34 34 H 1.09008 * 109.46919 * 60.00318 * 20 18 17 35 35 H 1.09000 * 109.46894 * 180.02562 * 20 18 17 36 36 H 1.08993 * 109.47667 * 300.00368 * 20 18 17 37 37 H 1.08997 * 109.47158 * 60.00136 * 21 18 17 38 38 H 1.09000 * 109.47182 * 179.97438 * 21 18 17 39 39 H 1.08995 * 109.47744 * 300.00183 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4339 9 1 2.3077 4.2604 -3.8999 10 1 4.6982 4.1994 -3.4969 11 1 3.5539 2.2200 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1672 0.0046 14 6 1.4059 -2.4366 -0.0038 15 6 1.9633 -3.6732 -0.1697 16 6 1.0439 -4.6943 -0.1253 17 6 -0.2227 -4.3097 0.0707 18 6 -1.3975 -5.2499 0.1543 19 6 -1.1906 -6.2225 1.3171 20 6 -2.6789 -4.4457 0.3833 21 6 -1.5159 -6.0357 -1.1531 22 16 -0.3302 -2.6128 0.2118 23 1 -0.3634 -0.1168 1.0210 24 1 -0.3634 0.9426 -0.4094 25 1 -0.3634 -0.8258 -0.6116 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0309 4.4436 -0.8505 29 1 3.0207 -3.8324 -0.3213 30 1 1.3236 -5.7312 -0.2394 31 1 -1.1062 -5.6625 2.2485 32 1 -2.0401 -6.9027 1.3774 33 1 -0.2777 -6.7953 1.1536 34 1 -2.8261 -3.7530 -0.4454 35 1 -3.5285 -5.1258 0.4443 36 1 -2.5948 -3.8855 1.3145 37 1 -0.6032 -6.6085 -1.3166 38 1 -2.3654 -6.7160 -1.0924 39 1 -1.6633 -5.3429 -1.9814 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150818196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -14.479481 kcal Electronic energy + Delta-G solvation = -19783.697460 eV Core-core repulsion = 16817.748060 eV Total energy + Delta-G solvation = -2965.949400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.14423 -38.48771 -35.81713 -34.81848 -32.65268 -29.37238 -27.74877 -27.49671 -27.47080 -26.14658 -24.61559 -22.77801 -20.44047 -20.07074 -17.79076 -17.28121 -16.53790 -15.80944 -15.41188 -14.96110 -14.79419 -14.39981 -14.17855 -14.09358 -13.35687 -12.94563 -12.87422 -12.57877 -12.53897 -12.46108 -12.21039 -11.98308 -11.89565 -11.67212 -11.38223 -11.23191 -11.16709 -11.10071 -10.91746 -10.62867 -10.23023 -10.06037 -9.66566 -9.12320 -8.45236 -8.43270 -8.29332 -7.67143 -6.05338 -4.10324 0.83233 1.73611 2.18055 2.69588 3.30281 3.37023 3.41839 3.80591 3.97527 4.39349 4.44765 4.64155 4.72908 5.08932 5.12610 5.29628 5.33468 5.38176 5.44271 5.52311 5.54758 5.59850 5.63357 5.71219 5.74486 5.77000 5.88399 6.02587 6.07255 6.08830 6.23498 6.40423 6.60401 7.02441 7.40214 7.47657 7.90726 8.20608 8.31153 8.86623 9.02097 9.54754 11.02769 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.004014 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.841835 B = 6973.610930 C = 7071.568639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.574 3.426 13 O -0.530 6.530 14 C -0.253 4.253 15 C -0.068 4.068 16 C -0.149 4.149 17 C -0.225 4.225 18 C 0.003 3.997 19 C -0.135 4.135 20 C -0.153 4.153 21 C -0.136 4.136 22 S 0.224 5.776 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 -17.487 2.845 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.360 3.640 13 O -0.409 6.409 14 C -0.374 4.374 15 C -0.101 4.101 16 C -0.180 4.180 17 C -0.344 4.344 18 C 0.001 3.999 19 C -0.193 4.193 20 C -0.211 4.211 21 C -0.194 4.194 22 S 0.495 5.505 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.526 -16.271 3.135 22.036 hybrid contribution 1.386 -0.733 -1.274 2.020 sum -13.141 -17.004 1.861 21.571 Atomic orbital electron populations 1.21852 0.81994 1.02905 1.00855 1.48044 1.05823 1.07817 1.70947 1.19368 0.92638 0.77492 0.97755 1.21435 1.36716 1.06373 0.92198 0.92365 1.24932 0.95245 0.96335 0.97528 1.69933 1.38313 1.14316 1.30763 0.86478 0.77698 0.78601 0.84558 1.20597 1.21035 1.19856 1.16975 0.86901 0.82066 0.78025 1.90795 1.12679 1.86595 1.50804 1.25014 0.97340 0.98656 1.16378 1.20649 1.01146 0.90071 0.98202 1.19752 0.91607 1.00262 1.06375 1.24843 0.98768 1.02362 1.08407 1.19063 0.90943 0.93343 0.96525 1.21874 1.01789 0.98346 0.97321 1.22001 0.96514 1.00143 1.02399 1.21880 1.01860 0.99648 0.96016 1.83545 1.03682 0.96385 1.66934 0.92748 0.88875 0.91944 0.94631 0.93504 0.92660 0.83540 0.85051 0.92357 0.92267 0.92311 0.91941 0.91645 0.91969 0.92312 0.92276 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 8.92 59.85 0.53 1.70 16 2 N -0.59 -13.21 2.86 -184.54 -0.53 -13.74 16 3 C 0.25 6.54 5.13 -5.20 -0.03 6.51 16 4 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.57 13.01 7.64 -12.89 -0.10 12.91 16 13 O -0.53 -14.17 16.43 5.19 0.09 -14.09 16 14 C -0.25 -4.52 6.23 -36.79 -0.23 -4.75 16 15 C -0.07 -1.09 10.02 -40.44 -0.41 -1.49 16 16 C -0.15 -1.93 9.18 -41.42 -0.38 -2.31 16 17 C -0.23 -2.70 4.96 -35.86 -0.18 -2.87 16 18 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 19 C -0.14 -1.10 8.33 37.16 0.31 -0.79 16 20 C -0.15 -1.24 7.52 37.16 0.28 -0.96 16 21 C -0.14 -1.13 8.33 37.16 0.31 -0.82 16 22 S 0.22 2.96 16.18 -107.50 -1.74 1.22 16 23 H 0.05 0.77 7.76 -51.93 -0.40 0.36 16 24 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 25 H 0.06 0.94 4.62 -23.30 -0.11 0.83 16 26 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.05 1.40 7.42 -51.93 -0.39 1.01 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.13 1.42 7.90 -52.48 -0.41 1.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 34 H 0.06 0.52 7.90 -51.92 -0.41 0.11 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -33.03 331.83 -7.78 -40.81 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.86 Total: -3.47 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.45 Total: -6.80 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.65 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.74 Total: 1.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.03 -7.78 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150818196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.329 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds