Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99721 * 2 1 4 4 C 1.50699 * 109.47086 * 269.99755 * 3 2 1 5 5 H 1.08004 * 120.00116 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00279 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99691 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00240 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47268 * 89.99411 * 8 6 4 10 10 H 1.48504 * 109.47212 * 209.99778 * 8 6 4 11 11 H 1.48506 * 109.47185 * 329.99586 * 8 6 4 12 12 C 1.34776 * 119.99948 * 179.97438 * 2 1 3 13 13 O 1.21701 * 119.99797 * 180.22258 * 12 2 1 14 14 C 1.46586 * 119.99721 * 0.21883 * 12 2 1 15 15 C 1.36651 * 125.45365 * 171.42395 * 14 12 2 16 16 C 1.37469 * 113.29372 * 179.73460 * 15 14 12 17 17 C 1.33810 * 115.10580 * 359.97438 * 16 15 14 18 18 C 1.50700 * 124.52585 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47011 * 60.00606 * 18 17 16 20 20 C 1.53003 * 109.47115 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47091 * 300.00185 * 18 17 16 22 22 S 1.70621 * 110.95409 * 0.02562 * 17 16 15 23 23 H 1.09001 * 109.47423 * 263.47632 * 1 2 3 24 24 H 1.09002 * 109.47300 * 23.47758 * 1 2 3 25 25 H 1.09001 * 109.47572 * 143.47433 * 1 2 3 26 26 H 1.08995 * 109.47421 * 29.99727 * 3 2 1 27 27 H 1.09006 * 109.47115 * 150.00359 * 3 2 1 28 28 H 0.97003 * 120.00017 * 180.02562 * 7 6 4 29 29 H 1.08002 * 123.35049 * 359.69711 * 15 14 12 30 30 H 1.08003 * 122.44826 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46834 * 59.99644 * 19 18 17 32 32 H 1.09000 * 109.47140 * 180.02562 * 19 18 17 33 33 H 1.09002 * 109.46806 * 300.00132 * 19 18 17 34 34 H 1.09008 * 109.46919 * 60.00318 * 20 18 17 35 35 H 1.09000 * 109.46894 * 180.02562 * 20 18 17 36 36 H 1.08993 * 109.47667 * 300.00368 * 20 18 17 37 37 H 1.08997 * 109.47158 * 60.00136 * 21 18 17 38 38 H 1.09000 * 109.47182 * 179.97438 * 21 18 17 39 39 H 1.08995 * 109.47744 * 300.00183 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4339 9 1 2.3077 4.2604 -3.8999 10 1 4.6982 4.1994 -3.4969 11 1 3.5539 2.2200 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1672 0.0046 14 6 1.4059 -2.4366 -0.0038 15 6 1.9633 -3.6732 -0.1697 16 6 1.0439 -4.6943 -0.1253 17 6 -0.2227 -4.3097 0.0707 18 6 -1.3975 -5.2499 0.1543 19 6 -1.1906 -6.2225 1.3171 20 6 -2.6789 -4.4457 0.3833 21 6 -1.5159 -6.0357 -1.1531 22 16 -0.3302 -2.6128 0.2118 23 1 -0.3634 -0.1168 1.0210 24 1 -0.3634 0.9426 -0.4094 25 1 -0.3634 -0.8258 -0.6116 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0309 4.4436 -0.8505 29 1 3.0207 -3.8324 -0.3213 30 1 1.3236 -5.7312 -0.2394 31 1 -1.1062 -5.6625 2.2485 32 1 -2.0401 -6.9027 1.3774 33 1 -0.2777 -6.7953 1.1536 34 1 -2.8261 -3.7530 -0.4454 35 1 -3.5285 -5.1258 0.4443 36 1 -2.5948 -3.8855 1.3145 37 1 -0.6032 -6.6085 -1.3166 38 1 -2.3654 -6.7160 -1.0924 39 1 -1.6633 -5.3429 -1.9814 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150818196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -34.524607 kcal Electronic energy + Delta-G solvation = -19784.566682 eV Core-core repulsion = 16817.748060 eV Total energy + Delta-G solvation = -2966.818621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75897 -39.54844 -36.93412 -36.54653 -34.79495 -30.94828 -29.24447 -28.25594 -28.08024 -27.71369 -26.12880 -24.51395 -21.63920 -21.32047 -19.05684 -18.76110 -18.65520 -17.27199 -16.66809 -16.55711 -16.39872 -15.76504 -15.22371 -14.91340 -14.69302 -14.40964 -14.14500 -14.03746 -13.75364 -13.67864 -13.52536 -13.23996 -12.99749 -12.86196 -12.67599 -12.54335 -12.53089 -12.31627 -12.17897 -11.86502 -11.83413 -11.75971 -11.18718 -10.91228 -10.66155 -9.81111 -9.45836 -9.28746 -8.25199 -6.40486 -0.40500 0.55124 1.05589 1.35521 1.38974 1.47336 1.50303 2.14580 2.33712 2.40239 3.04422 3.56754 3.69518 3.95814 4.07307 4.12167 4.29874 4.45097 4.45889 4.58630 4.74054 4.77038 4.81273 4.89667 4.91624 4.98317 5.04727 5.06319 5.11994 5.18715 5.24222 5.38499 5.41465 5.45629 5.47689 5.51245 5.75184 6.00932 6.56423 6.67569 7.18865 7.34177 8.82221 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.004014 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.841835 B = 6973.610930 C = 7071.568639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.260 3.740 4 C -0.548 4.548 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.566 3.434 13 O -0.592 6.592 14 C -0.310 4.310 15 C -0.060 4.060 16 C -0.159 4.159 17 C -0.202 4.202 18 C 0.000 4.000 19 C -0.135 4.135 20 C -0.157 4.157 21 C -0.136 4.136 22 S 0.278 5.722 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.001 0.999 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 -19.357 2.033 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.333 5.333 3 C 0.139 3.861 4 C -0.586 4.586 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.355 3.645 13 O -0.476 6.476 14 C -0.430 4.430 15 C -0.095 4.095 16 C -0.188 4.188 17 C -0.322 4.322 18 C -0.001 4.001 19 C -0.193 4.193 20 C -0.215 4.215 21 C -0.194 4.194 22 S 0.550 5.450 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.552 -18.136 2.333 25.346 hybrid contribution 2.209 -0.288 -0.959 2.425 sum -15.343 -18.425 1.373 24.016 Atomic orbital electron populations 1.22150 0.78500 1.04103 1.03204 1.48016 1.08053 1.06392 1.70814 1.18871 0.91229 0.79499 0.96460 1.21669 1.37401 1.06764 0.92790 0.93048 1.25854 0.94633 0.96245 1.02175 1.70046 1.38684 1.14764 1.33068 0.85386 0.78277 0.78153 0.78815 1.18439 1.20419 1.20055 1.17650 0.86602 0.83583 0.76625 1.90730 1.15434 1.87749 1.53676 1.24606 1.00595 0.96635 1.21121 1.20821 1.01363 0.90487 0.96806 1.19842 0.91265 1.00669 1.07065 1.25382 0.99682 1.02254 1.04834 1.19274 0.89945 0.93168 0.97761 1.21889 1.02833 0.98278 0.96301 1.22062 0.96620 1.00514 1.02282 1.21897 1.02878 0.99715 0.94907 1.83096 0.99123 0.97133 1.65688 0.89821 0.88539 0.90009 0.94792 0.98116 0.92225 0.84774 0.82538 0.92897 0.90142 0.92295 0.92089 0.89486 0.92016 0.92306 0.90140 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.10 8.92 127.77 1.14 3.24 16 2 N -0.60 -27.82 2.86 -855.99 -2.45 -30.27 16 3 C 0.26 14.59 5.13 85.63 0.44 15.03 16 4 C -0.55 -32.54 9.39 25.60 0.24 -32.30 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.60 5.46 84.65 0.46 1.06 16 7 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.57 27.03 7.64 86.42 0.66 27.69 16 13 O -0.59 -34.16 16.43 -4.35 -0.07 -34.23 16 14 C -0.31 -11.21 6.23 24.08 0.15 -11.06 16 15 C -0.06 -1.95 10.02 21.72 0.22 -1.73 16 16 C -0.16 -3.82 9.18 21.08 0.19 -3.62 16 17 C -0.20 -4.28 4.96 24.68 0.12 -4.16 16 18 C 0.00 0.01 0.90 -52.93 -0.05 -0.04 16 19 C -0.13 -1.66 8.33 71.98 0.60 -1.06 16 20 C -0.16 -1.90 7.52 71.98 0.54 -1.36 16 21 C -0.14 -1.72 8.33 71.98 0.60 -1.12 16 22 S 0.28 6.79 16.18 -56.49 -0.91 5.88 16 23 H 0.08 2.22 7.76 -2.39 -0.02 2.21 16 24 H 0.10 3.07 8.02 -2.39 -0.02 3.05 16 25 H 0.08 2.33 4.62 -20.59 -0.10 2.24 16 26 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 27 H 0.00 0.05 7.42 -2.38 -0.02 0.03 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.16 2.95 7.90 -2.91 -0.02 2.93 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.74 7.86 -2.39 -0.02 0.72 16 34 H 0.06 0.77 7.90 -2.38 -0.02 0.75 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.77 7.90 -2.39 -0.02 0.75 16 37 H 0.06 0.76 7.86 -2.39 -0.02 0.74 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.96 331.83 5.14 -70.82 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.94 Total: 5.93 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 5.32 Total: -9.44 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.16 Total: -86.57 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.07 Total: -34.23 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 6.79 SS G_CDS: -0.91 Total: 5.88 kcal Total: -75.96 5.14 -70.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150818196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.298 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds