Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99638 * 2 1 4 4 H 1.48493 * 109.47191 * 274.97785 * 3 2 1 5 5 H 1.48495 * 109.47425 * 34.98311 * 3 2 1 6 6 H 1.48501 * 109.46802 * 154.98227 * 3 2 1 7 7 C 1.40046 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99682 * 186.14822 * 7 2 1 9 9 C 1.46375 * 120.00301 * 6.15809 * 7 2 1 10 10 O 1.21688 * 119.99945 * 353.93171 * 9 7 2 11 11 N 1.34775 * 119.99764 * 173.93631 * 9 7 2 12 12 C 1.46505 * 119.99868 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47106 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47106 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47488 * 179.97438 * 15 14 13 17 17 C 1.35938 * 117.00386 * 179.97438 * 16 15 14 18 18 C 1.38709 * 120.03228 * 0.27819 * 17 16 15 19 19 C 1.38152 * 119.97448 * 180.24734 * 18 17 16 20 20 C 1.38451 * 120.02582 * 359.47483 * 19 18 17 21 21 F 1.35100 * 119.96877 * 180.29465 * 20 19 18 22 22 C 1.38452 * 120.06485 * 0.27265 * 20 19 18 23 23 C 1.38157 * 120.02836 * 359.97438 * 22 20 19 24 24 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00664 * 359.97438 * 11 9 7 26 26 H 1.08999 * 109.46679 * 60.00100 * 12 11 9 27 27 H 1.09000 * 109.47347 * 300.00434 * 12 11 9 28 28 H 1.08999 * 109.46791 * 60.00042 * 13 12 11 29 29 H 1.09008 * 109.47014 * 300.00153 * 13 12 11 30 30 H 1.08999 * 109.47594 * 60.00126 * 14 13 12 31 31 H 1.09002 * 109.46776 * 299.99369 * 14 13 12 32 32 H 1.09005 * 109.47467 * 59.99539 * 15 14 13 33 33 H 1.09000 * 109.47163 * 300.00031 * 15 14 13 34 34 H 1.08001 * 120.01326 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.98901 * 179.74285 * 19 18 17 36 36 H 1.08000 * 119.99101 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.01872 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1349 10 8 0.0646 -2.4828 -0.1368 11 7 1.9612 -3.6342 -0.2573 12 6 1.2351 -4.8995 -0.3922 13 6 2.2351 -6.0511 -0.5131 14 6 1.4767 -7.3723 -0.6547 15 6 2.4767 -8.5239 -0.7763 16 8 1.7685 -9.7580 -0.9079 17 6 2.5145 -10.8880 -1.0279 18 6 3.8993 -10.8104 -1.0133 19 6 4.6564 -11.9590 -1.1404 20 6 4.0333 -13.1885 -1.2716 21 9 4.7748 -14.3116 -1.3899 22 6 2.6511 -13.2681 -1.2811 23 6 1.8917 -12.1204 -1.1592 24 1 -0.4850 0.8400 -0.0004 25 1 2.9312 -3.6296 -0.2560 26 1 0.6094 -4.8659 -1.2842 27 1 0.6079 -5.0540 0.4858 28 1 2.8604 -6.0844 0.3790 29 1 2.8625 -5.8968 -1.3911 30 1 0.8517 -7.3388 -1.5471 31 1 0.8491 -7.5268 0.2230 32 1 3.1022 -8.5577 0.1158 33 1 3.1041 -8.3692 -1.6541 34 1 4.3856 -9.8521 -0.9061 35 1 5.7347 -11.8984 -1.1332 36 1 2.1664 -14.2277 -1.3839 37 1 0.8135 -12.1827 -1.1663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153552139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -114.706550 kcal Electronic energy + Delta-G solvation = -19979.642456 eV Core-core repulsion = 16443.133708 eV Total energy + Delta-G solvation = -3536.508748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.13068 -40.41870 -37.80455 -37.33848 -35.07921 -32.71844 -32.05688 -31.57718 -29.78252 -28.05671 -26.07877 -24.03913 -22.98167 -22.04065 -21.14331 -19.63174 -18.61990 -17.68215 -17.09417 -16.89571 -16.61301 -15.83581 -15.31762 -15.08436 -14.92600 -14.87078 -14.23440 -13.99898 -13.98077 -13.40864 -13.33373 -12.99621 -12.43051 -12.40306 -11.96428 -11.91367 -11.64825 -11.21805 -11.10832 -11.08383 -10.87303 -10.84939 -10.50704 -10.43413 -10.21893 -9.58826 -8.85580 -8.44277 -7.62511 -7.51667 -6.20185 -4.64460 0.76152 0.85344 2.82501 3.13177 3.19669 3.20289 3.23810 3.95587 4.09880 4.28594 4.38156 4.57976 4.65215 4.70631 4.71247 4.83588 4.94633 5.05266 5.19028 5.26735 5.46096 5.52837 5.57888 5.73594 5.75888 5.76081 5.84085 5.88046 5.94842 6.10940 6.34164 6.55160 6.56500 7.05095 7.42981 7.92281 8.08880 8.32348 9.01837 9.52734 10.59258 10.77736 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.057412 B = 0.002030 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.589746 B =13786.452208 C =14239.072337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.770 5.770 12 C 0.134 3.866 13 C -0.125 4.125 14 C -0.115 4.115 15 C 0.059 3.941 16 O -0.310 6.310 17 C 0.128 3.872 18 C -0.183 4.183 19 C -0.111 4.111 20 C 0.053 3.947 21 F -0.143 7.143 22 C -0.113 4.113 23 C -0.126 4.126 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -23.159 -2.455 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.425 5.425 12 C 0.008 3.992 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.016 4.016 16 O -0.224 6.224 17 C 0.081 3.919 18 C -0.201 4.201 19 C -0.130 4.130 20 C 0.033 3.967 21 F -0.122 7.122 22 C -0.132 4.132 23 C -0.145 4.145 24 H 0.079 0.921 25 H 0.211 0.789 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.452 -23.061 -2.448 24.359 hybrid contribution 1.345 0.644 -0.035 1.492 sum 8.797 -22.417 -2.483 24.209 Atomic orbital electron populations 1.70030 1.07090 1.27266 1.35292 1.25719 0.94608 1.00331 0.92628 0.86355 0.80207 0.81491 0.78665 1.19812 1.20455 1.18906 1.20891 0.94085 0.89622 1.53811 0.91401 1.18235 0.87160 0.82451 0.76422 1.90598 1.14129 1.86480 1.55254 1.46139 1.08548 1.05850 1.82006 1.20814 0.93909 0.83772 1.00668 1.21686 0.98870 0.93342 1.02373 1.21472 0.98046 0.91660 1.04167 1.22985 0.95742 0.81547 1.01351 1.86110 1.35604 1.13532 1.87134 1.19076 0.89900 0.87212 0.95672 1.21195 0.92690 0.99602 1.06661 1.20956 1.00949 0.90723 1.00403 1.17581 0.89309 0.82553 1.07223 1.91489 1.76793 1.50008 1.93908 1.20963 0.91772 0.99519 1.00919 1.20328 1.00977 0.88955 1.04251 0.92109 0.78912 0.93297 0.93312 0.91441 0.91440 0.90428 0.90425 0.91727 0.91716 0.84275 0.84472 0.84101 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.14 11.85 55.55 0.66 -22.48 16 2 C 0.09 2.43 5.49 -17.36 -0.10 2.33 16 3 Si 0.91 20.07 29.56 -169.99 -5.03 15.04 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.45 9.53 -35.63 -0.34 -15.79 16 8 H 0.07 1.75 7.86 -52.48 -0.41 1.33 16 9 C 0.55 15.81 7.74 -12.99 -0.10 15.71 16 10 O -0.58 -19.03 15.05 5.20 0.08 -18.95 16 11 N -0.77 -16.94 5.55 -61.72 -0.34 -17.28 16 12 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 13 C -0.12 -1.54 5.33 -26.73 -0.14 -1.69 16 14 C -0.12 -1.24 5.58 -26.73 -0.15 -1.39 16 15 C 0.06 0.54 4.74 37.16 0.18 0.71 16 16 O -0.31 -3.30 10.14 -19.55 -0.20 -3.50 16 17 C 0.13 1.23 6.69 -39.23 -0.26 0.97 16 18 C -0.18 -1.55 9.04 -39.44 -0.36 -1.90 16 19 C -0.11 -0.92 10.02 -39.53 -0.40 -1.31 16 20 C 0.05 0.47 7.30 -39.42 -0.29 0.18 16 21 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 22 C -0.11 -0.90 10.02 -39.53 -0.40 -1.29 16 23 C -0.13 -1.08 9.99 -39.44 -0.39 -1.47 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.38 7.19 8.45 -40.82 -0.35 6.84 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 33 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.14 0.95 6.30 -52.49 -0.33 0.62 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -34.96 327.12 -7.45 -42.41 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.82 Total: 3.70 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.77 Total: -2.51 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.32 Total: -39.76 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.12 Total: -22.45 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.96 -7.45 -42.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153552139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.300 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds