Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99638 * 2 1 4 4 H 1.48493 * 109.47191 * 274.97785 * 3 2 1 5 5 H 1.48495 * 109.47425 * 34.98311 * 3 2 1 6 6 H 1.48501 * 109.46802 * 154.98227 * 3 2 1 7 7 C 1.40046 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99682 * 186.14822 * 7 2 1 9 9 C 1.46375 * 120.00301 * 6.15809 * 7 2 1 10 10 O 1.21688 * 119.99945 * 353.93171 * 9 7 2 11 11 N 1.34775 * 119.99764 * 173.93631 * 9 7 2 12 12 C 1.46505 * 119.99868 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47106 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47106 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47488 * 179.97438 * 15 14 13 17 17 C 1.35938 * 117.00386 * 179.97438 * 16 15 14 18 18 C 1.38709 * 120.03228 * 0.27819 * 17 16 15 19 19 C 1.38152 * 119.97448 * 180.24734 * 18 17 16 20 20 C 1.38451 * 120.02582 * 359.47483 * 19 18 17 21 21 F 1.35100 * 119.96877 * 180.29465 * 20 19 18 22 22 C 1.38452 * 120.06485 * 0.27265 * 20 19 18 23 23 C 1.38157 * 120.02836 * 359.97438 * 22 20 19 24 24 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00664 * 359.97438 * 11 9 7 26 26 H 1.08999 * 109.46679 * 60.00100 * 12 11 9 27 27 H 1.09000 * 109.47347 * 300.00434 * 12 11 9 28 28 H 1.08999 * 109.46791 * 60.00042 * 13 12 11 29 29 H 1.09008 * 109.47014 * 300.00153 * 13 12 11 30 30 H 1.08999 * 109.47594 * 60.00126 * 14 13 12 31 31 H 1.09002 * 109.46776 * 299.99369 * 14 13 12 32 32 H 1.09005 * 109.47467 * 59.99539 * 15 14 13 33 33 H 1.09000 * 109.47163 * 300.00031 * 15 14 13 34 34 H 1.08001 * 120.01326 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.98901 * 179.74285 * 19 18 17 36 36 H 1.08000 * 119.99101 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.01872 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1349 10 8 0.0646 -2.4828 -0.1368 11 7 1.9612 -3.6342 -0.2573 12 6 1.2351 -4.8995 -0.3922 13 6 2.2351 -6.0511 -0.5131 14 6 1.4767 -7.3723 -0.6547 15 6 2.4767 -8.5239 -0.7763 16 8 1.7685 -9.7580 -0.9079 17 6 2.5145 -10.8880 -1.0279 18 6 3.8993 -10.8104 -1.0133 19 6 4.6564 -11.9590 -1.1404 20 6 4.0333 -13.1885 -1.2716 21 9 4.7748 -14.3116 -1.3899 22 6 2.6511 -13.2681 -1.2811 23 6 1.8917 -12.1204 -1.1592 24 1 -0.4850 0.8400 -0.0004 25 1 2.9312 -3.6296 -0.2560 26 1 0.6094 -4.8659 -1.2842 27 1 0.6079 -5.0540 0.4858 28 1 2.8604 -6.0844 0.3790 29 1 2.8625 -5.8968 -1.3911 30 1 0.8517 -7.3388 -1.5471 31 1 0.8491 -7.5268 0.2230 32 1 3.1022 -8.5577 0.1158 33 1 3.1041 -8.3692 -1.6541 34 1 4.3856 -9.8521 -0.9061 35 1 5.7347 -11.8984 -1.1332 36 1 2.1664 -14.2277 -1.3839 37 1 0.8135 -12.1827 -1.1663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153552139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -138.268239 kcal Electronic energy + Delta-G solvation = -19980.664167 eV Core-core repulsion = 16443.133708 eV Total energy + Delta-G solvation = -3537.530459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.82660 -41.09659 -39.46321 -38.38216 -36.49679 -34.66884 -33.76633 -32.23570 -30.61967 -29.41180 -27.84608 -25.01350 -23.81687 -22.89848 -22.17319 -21.60852 -19.39872 -19.02961 -18.32801 -17.60329 -17.41201 -17.40012 -16.55922 -16.27772 -16.08771 -15.90150 -15.68443 -15.24721 -14.70087 -14.59252 -14.35773 -14.08485 -13.70584 -13.67842 -13.26353 -12.95049 -12.91318 -12.76697 -12.69028 -12.55446 -12.13163 -11.98099 -11.91130 -11.70881 -11.45760 -10.93150 -10.19269 -9.87875 -9.47964 -9.11980 -8.30021 -6.85147 0.15661 0.19106 1.41215 1.42403 1.58598 2.09572 2.26276 2.47155 2.56194 3.18324 3.32466 3.61139 3.67631 3.80379 3.88227 3.92416 4.12073 4.24466 4.28255 4.31338 4.41856 4.50858 4.64871 4.76898 4.82298 4.90836 4.99771 5.11956 5.14072 5.22656 5.27057 5.31669 5.32864 5.70867 5.88449 6.26161 6.28074 6.37507 6.86931 7.56954 8.49343 8.67399 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.057412 B = 0.002030 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.589746 B =13786.452208 C =14239.072337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.131 3.869 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.061 3.939 16 O -0.328 6.328 17 C 0.110 3.890 18 C -0.184 4.184 19 C -0.114 4.114 20 C 0.036 3.964 21 F -0.150 7.150 22 C -0.112 4.112 23 C -0.134 4.134 24 H 0.274 0.726 25 H 0.398 0.602 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.255 -23.195 -2.550 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.611 4.611 8 H 0.108 0.892 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.411 5.411 12 C 0.007 3.993 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.014 4.014 16 O -0.242 6.242 17 C 0.064 3.936 18 C -0.203 4.203 19 C -0.132 4.132 20 C 0.017 3.983 21 F -0.129 7.129 22 C -0.130 4.130 23 C -0.153 4.153 24 H 0.084 0.916 25 H 0.232 0.768 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.028 -23.155 -2.546 25.361 hybrid contribution 0.533 0.555 -0.006 0.770 sum 10.561 -22.600 -2.552 25.076 Atomic orbital electron populations 1.70201 1.09652 1.28981 1.36489 1.27037 0.95531 1.05164 0.91206 0.84967 0.78934 0.74972 0.79157 1.18795 1.19877 1.16939 1.21459 0.95322 0.90233 1.54051 0.89156 1.18679 0.86797 0.84535 0.76214 1.90550 1.16420 1.87699 1.57732 1.45797 1.09450 1.05625 1.80219 1.20960 0.95123 0.84350 0.98900 1.21508 0.97471 0.91328 1.04066 1.21350 0.98265 0.91713 1.03585 1.22950 0.95079 0.80492 1.02853 1.86065 1.36445 1.14118 1.87535 1.19310 0.90549 0.87138 0.96555 1.21386 0.92259 1.00441 1.06183 1.21191 1.01967 0.90348 0.99720 1.17843 0.89804 0.82707 1.07960 1.91470 1.76988 1.50405 1.94052 1.21175 0.91549 1.00232 1.00083 1.20530 1.01666 0.88909 1.04189 0.91570 0.76833 0.95220 0.95183 0.89644 0.89665 0.91142 0.91120 0.90167 0.90171 0.82576 0.82735 0.82253 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.81 11.85 21.84 0.26 -50.55 16 2 C 0.03 1.42 5.49 85.30 0.47 1.89 16 3 Si 1.00 40.63 29.56 68.60 2.03 42.66 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.57 -32.42 9.53 24.83 0.24 -32.18 16 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 16 9 C 0.53 31.14 7.74 86.36 0.67 31.81 16 10 O -0.64 -43.35 15.05 -4.31 -0.06 -43.42 16 11 N -0.76 -33.23 5.55 -467.40 -2.59 -35.82 16 12 C 0.13 4.86 5.67 86.38 0.49 5.35 16 13 C -0.11 -2.42 5.33 30.59 0.16 -2.26 16 14 C -0.11 -2.25 5.58 30.59 0.17 -2.08 16 15 C 0.06 0.97 4.74 71.98 0.34 1.31 16 16 O -0.33 -6.52 10.14 -92.85 -0.94 -7.46 16 17 C 0.11 1.97 6.69 22.50 0.15 2.12 16 18 C -0.18 -2.73 9.04 22.36 0.20 -2.53 16 19 C -0.11 -1.66 10.02 22.30 0.22 -1.44 16 20 C 0.04 0.60 7.30 22.37 0.16 0.76 16 21 F -0.15 -2.77 17.27 44.97 0.78 -1.99 16 22 C -0.11 -1.64 10.02 22.30 0.22 -1.41 16 23 C -0.13 -2.14 9.99 22.36 0.22 -1.92 16 24 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 25 H 0.40 14.47 8.45 -92.71 -0.78 13.69 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.05 7.65 -2.38 -0.02 1.03 16 33 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 34 H 0.16 1.68 6.30 -2.91 -0.02 1.66 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -78.37 327.12 3.49 -74.88 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.30 Total: 22.27 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 3.73 Total: -0.57 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.34 Total: -86.37 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.01 Total: -50.88 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -78.37 3.49 -74.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153552139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.387 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds