Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 119.95174 * 2 1 4 4 C 1.38254 * 120.12303 * 179.97438 * 3 2 1 5 5 C 1.38326 * 120.03451 * 0.02562 * 4 3 2 6 6 F 1.35098 * 120.05006 * 179.97438 * 5 4 3 7 7 C 1.38915 * 119.90531 * 359.97200 * 5 4 3 8 8 O 1.35948 * 120.06668 * 179.72529 * 7 5 4 9 9 C 1.42895 * 117.00499 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47686 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00085 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99815 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46761 * 325.00009 * 13 12 10 15 15 C 1.52995 * 109.46913 * 85.00079 * 13 12 10 16 16 C 1.50700 * 109.46729 * 205.00174 * 13 12 10 17 17 H 1.07996 * 120.00304 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99457 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00275 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99839 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47198 * 60.00395 * 20 18 16 22 22 H 1.48500 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48511 * 109.47162 * 300.00542 * 20 18 16 24 24 C 1.38177 * 119.95240 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47195 * 90.00647 * 1 2 3 26 26 H 1.09003 * 109.47531 * 209.99737 * 1 2 3 27 27 H 1.09003 * 109.47515 * 330.00436 * 1 2 3 28 28 H 1.07995 * 119.93465 * 359.97383 * 3 2 1 29 29 H 1.08004 * 119.98029 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46836 * 300.00713 * 9 8 7 31 31 H 1.09001 * 109.46915 * 60.00028 * 9 8 7 32 32 H 0.96996 * 120.00011 * 0.02562 * 12 10 9 33 33 H 1.09005 * 109.46948 * 180.02562 * 15 13 12 34 34 H 1.08995 * 109.47380 * 300.00087 * 15 13 12 35 35 H 1.08999 * 109.47464 * 60.00361 * 15 13 12 36 36 H 0.97002 * 120.00480 * 180.02562 * 19 18 16 37 37 H 1.08008 * 120.01548 * 0.05165 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5798 1.2021 0.0005 5 6 4.2757 0.0067 0.0005 6 9 5.6267 0.0103 0.0005 7 6 3.5835 -1.1977 0.0006 8 8 4.2641 -2.3745 -0.0051 9 6 3.4869 -3.5736 -0.0052 10 6 4.4058 -4.7680 -0.0124 11 8 5.6080 -4.6081 -0.0165 12 7 3.8916 -6.0138 -0.0133 13 6 4.7850 -7.1750 -0.0197 14 1 5.6713 -6.9481 -0.6123 15 6 5.2015 -7.5059 1.4147 16 6 4.0682 -8.3568 -0.6201 17 1 3.0494 -8.2533 -0.9630 18 6 4.7136 -9.5700 -0.7327 19 7 5.9545 -9.6959 -0.3156 20 14 3.8250 -11.0353 -1.4762 21 1 3.4197 -10.7141 -2.8683 22 1 4.7306 -12.2122 -1.4829 23 1 2.6180 -11.3445 -0.6681 24 6 2.1968 -1.1972 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6554 2.1322 -0.0004 29 1 4.1167 2.1392 0.0001 30 1 2.8614 -3.6012 0.8871 31 1 2.8547 -3.5967 -0.8929 32 1 2.9301 -6.1417 -0.0096 33 1 5.8666 -8.3696 1.4099 34 1 5.7198 -6.6511 1.8490 35 1 4.3152 -7.7328 2.0073 36 1 6.4087 -10.5493 -0.3951 37 1 1.6563 -2.1323 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156040338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -101.368740 kcal Electronic energy + Delta-G solvation = -21167.873056 eV Core-core repulsion = 17631.942679 eV Total energy + Delta-G solvation = -3535.930377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.75398 -40.33651 -38.89653 -37.51962 -34.82302 -32.64750 -32.45882 -30.60608 -29.63672 -27.77014 -26.58339 -25.28905 -23.10343 -21.81457 -21.18757 -19.56883 -18.27503 -17.57929 -17.05370 -16.61133 -16.44141 -15.57346 -15.35853 -15.23115 -14.71852 -14.47846 -14.31534 -13.98743 -13.68305 -13.48922 -13.33807 -12.74238 -12.44034 -12.23494 -12.05827 -11.80576 -11.68875 -11.36162 -11.15074 -11.08250 -10.95773 -10.75821 -10.36770 -10.27075 -9.14018 -9.10026 -9.05284 -8.59696 -8.27837 -8.01929 -6.15816 -4.26063 0.89175 1.06089 2.74038 3.19461 3.23354 3.28910 3.29903 3.32694 4.01138 4.18720 4.33250 4.47588 4.49294 4.78345 4.91215 4.98050 5.13219 5.16936 5.20090 5.27224 5.28763 5.42060 5.52855 5.77400 5.83426 5.97192 6.21745 6.45625 6.77972 6.91741 7.09365 7.15265 7.36454 7.50016 7.63782 7.85980 8.10031 8.53970 8.71629 8.99647 9.41255 10.90162 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.003274 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.404268 B = 8549.281932 C = 9256.760507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.136 4.136 4 C -0.113 4.113 5 C 0.064 3.936 6 F -0.130 7.130 7 C 0.108 3.892 8 O -0.278 6.278 9 C 0.038 3.962 10 C 0.502 3.498 11 O -0.529 6.529 12 N -0.704 5.704 13 C 0.266 3.734 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.188 4.188 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.390 0.610 33 H 0.092 0.908 34 H 0.015 0.985 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 18.956 1.264 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.044 3.956 6 F -0.108 7.108 7 C 0.060 3.940 8 O -0.190 6.190 9 C -0.041 4.041 10 C 0.285 3.715 11 O -0.405 6.405 12 N -0.354 5.354 13 C 0.165 3.835 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.207 4.207 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.222 0.778 33 H 0.110 0.890 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.050 18.845 1.277 21.883 hybrid contribution -0.892 -0.978 -0.366 1.373 sum -11.942 17.867 0.911 21.510 Atomic orbital electron populations 1.20815 0.90471 1.03155 1.02726 1.19758 0.96436 0.92242 0.97308 1.20767 0.92913 0.97969 1.03771 1.20985 0.94844 0.96259 1.01055 1.17008 0.77447 0.91729 1.09456 1.91530 1.27958 1.97173 1.94176 1.19139 0.91070 0.85773 0.98000 1.86277 1.33851 1.11038 1.87784 1.22732 0.94510 0.83532 1.03318 1.19808 0.88948 0.84081 0.78665 1.90727 1.15041 1.85652 1.49117 1.46424 1.10867 1.05477 1.72629 1.18801 0.89917 0.80567 0.94198 0.93180 1.22093 1.00230 1.01134 0.97239 1.21156 0.99927 0.94558 1.41890 0.92020 1.24894 0.94906 0.98769 0.95113 1.69890 1.10799 1.25631 1.45636 0.86479 0.79340 0.81449 0.79647 1.20139 1.21085 1.20132 1.21088 0.91734 0.99669 1.08192 0.90719 0.91196 0.91173 0.84993 0.84087 0.89286 0.89230 0.77791 0.88987 0.96545 0.95355 0.92407 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.06 -0.51 5.88 -104.64 -0.62 -1.12 16 3 C -0.14 -1.16 9.69 -39.57 -0.38 -1.54 16 4 C -0.11 -1.14 10.02 -39.54 -0.40 -1.54 16 5 C 0.06 0.87 7.31 -39.30 -0.29 0.59 16 6 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 7 C 0.11 1.51 6.69 -39.17 -0.26 1.25 16 8 O -0.28 -4.78 9.53 -39.49 -0.38 -5.16 16 9 C 0.04 0.55 5.22 36.00 0.19 0.74 16 10 C 0.50 10.17 7.87 -10.99 -0.09 10.08 16 11 O -0.53 -13.43 16.16 -14.36 -0.23 -13.67 16 12 N -0.70 -14.28 5.07 -54.93 -0.28 -14.56 16 13 C 0.27 6.74 2.56 -69.08 -0.18 6.57 16 14 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 16 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.78 11.32 55.43 0.63 -24.15 16 20 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.19 -2.02 8.69 -39.45 -0.34 -2.36 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 30 H 0.09 1.02 7.67 -51.93 -0.40 0.62 16 31 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.14 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -32.97 323.87 -7.09 -40.06 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.68 Total: 2.93 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.05 Total: -3.63 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.35 Total: -38.71 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.61 Total: -18.83 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.97 -7.09 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156040338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.305 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds