Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 119.95174 * 2 1 4 4 C 1.38254 * 120.12303 * 179.97438 * 3 2 1 5 5 C 1.38326 * 120.03451 * 0.02562 * 4 3 2 6 6 F 1.35098 * 120.05006 * 179.97438 * 5 4 3 7 7 C 1.38915 * 119.90531 * 359.97200 * 5 4 3 8 8 O 1.35948 * 120.06668 * 179.72529 * 7 5 4 9 9 C 1.42895 * 117.00499 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47686 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00085 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99815 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46761 * 325.00009 * 13 12 10 15 15 C 1.52995 * 109.46913 * 85.00079 * 13 12 10 16 16 C 1.50700 * 109.46729 * 205.00174 * 13 12 10 17 17 H 1.07996 * 120.00304 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99457 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00275 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99839 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47198 * 60.00395 * 20 18 16 22 22 H 1.48500 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48511 * 109.47162 * 300.00542 * 20 18 16 24 24 C 1.38177 * 119.95240 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47195 * 90.00647 * 1 2 3 26 26 H 1.09003 * 109.47531 * 209.99737 * 1 2 3 27 27 H 1.09003 * 109.47515 * 330.00436 * 1 2 3 28 28 H 1.07995 * 119.93465 * 359.97383 * 3 2 1 29 29 H 1.08004 * 119.98029 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46836 * 300.00713 * 9 8 7 31 31 H 1.09001 * 109.46915 * 60.00028 * 9 8 7 32 32 H 0.96996 * 120.00011 * 0.02562 * 12 10 9 33 33 H 1.09005 * 109.46948 * 180.02562 * 15 13 12 34 34 H 1.08995 * 109.47380 * 300.00087 * 15 13 12 35 35 H 1.08999 * 109.47464 * 60.00361 * 15 13 12 36 36 H 0.97002 * 120.00480 * 180.02562 * 19 18 16 37 37 H 1.08008 * 120.01548 * 0.05165 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5798 1.2021 0.0005 5 6 4.2757 0.0067 0.0005 6 9 5.6267 0.0103 0.0005 7 6 3.5835 -1.1977 0.0006 8 8 4.2641 -2.3745 -0.0051 9 6 3.4869 -3.5736 -0.0052 10 6 4.4058 -4.7680 -0.0124 11 8 5.6080 -4.6081 -0.0165 12 7 3.8916 -6.0138 -0.0133 13 6 4.7850 -7.1750 -0.0197 14 1 5.6713 -6.9481 -0.6123 15 6 5.2015 -7.5059 1.4147 16 6 4.0682 -8.3568 -0.6201 17 1 3.0494 -8.2533 -0.9630 18 6 4.7136 -9.5700 -0.7327 19 7 5.9545 -9.6959 -0.3156 20 14 3.8250 -11.0353 -1.4762 21 1 3.4197 -10.7141 -2.8683 22 1 4.7306 -12.2122 -1.4829 23 1 2.6180 -11.3445 -0.6681 24 6 2.1968 -1.1972 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6554 2.1322 -0.0004 29 1 4.1167 2.1392 0.0001 30 1 2.8614 -3.6012 0.8871 31 1 2.8547 -3.5967 -0.8929 32 1 2.9301 -6.1417 -0.0096 33 1 5.8666 -8.3696 1.4099 34 1 5.7198 -6.6511 1.8490 35 1 4.3152 -7.7328 2.0073 36 1 6.4087 -10.5493 -0.3951 37 1 1.6563 -2.1323 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156040338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -122.854401 kcal Electronic energy + Delta-G solvation = -21168.804744 eV Core-core repulsion = 17631.942679 eV Total energy + Delta-G solvation = -3536.862065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.82808 -41.42135 -40.34149 -38.59042 -36.73598 -34.41159 -33.32955 -31.78202 -31.07271 -29.06888 -27.39858 -27.29534 -24.14057 -22.86503 -22.63650 -21.32240 -19.36222 -19.06781 -18.07330 -17.85680 -17.57861 -17.20539 -17.06466 -16.50541 -16.08035 -15.48833 -15.34419 -15.23291 -14.96401 -14.47055 -14.36301 -14.23565 -13.89551 -13.71130 -13.06078 -12.98710 -12.83606 -12.80551 -12.72742 -12.53106 -12.28682 -12.18077 -12.10524 -11.93154 -11.15153 -10.84987 -10.60269 -9.87155 -9.83453 -9.17615 -8.18583 -6.37188 0.09396 0.24522 1.45160 1.48221 1.55043 1.59862 1.61893 2.39587 2.54392 2.76119 3.12125 3.27175 3.61773 3.77615 3.88645 3.97337 4.07811 4.16753 4.26207 4.49745 4.71346 4.75558 4.88523 4.91535 4.93253 5.02225 5.05335 5.20474 5.32063 5.38084 5.52034 5.54945 5.62897 5.71214 5.86152 6.05764 6.22356 6.69608 6.84738 7.28946 7.45539 8.87882 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.003274 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.404268 B = 8549.281932 C = 9256.760507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.126 4.126 4 C -0.108 4.108 5 C 0.019 3.981 6 F -0.157 7.157 7 C 0.078 3.922 8 O -0.322 6.322 9 C 0.051 3.949 10 C 0.496 3.504 11 O -0.591 6.591 12 N -0.694 5.694 13 C 0.271 3.729 14 H -0.004 1.004 15 C -0.135 4.135 16 C -0.548 4.548 17 H 0.080 0.920 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.188 4.188 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.412 0.588 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.046 0.954 36 H 0.266 0.734 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.724 20.042 1.054 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.000 4.000 6 F -0.136 7.136 7 C 0.032 3.968 8 O -0.235 6.235 9 C -0.027 4.027 10 C 0.282 3.718 11 O -0.472 6.472 12 N -0.345 5.345 13 C 0.167 3.833 14 H 0.014 0.986 15 C -0.194 4.194 16 C -0.586 4.586 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.801 3.199 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.206 4.206 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.470 19.958 1.071 25.274 hybrid contribution 0.416 -1.181 -0.297 1.286 sum -15.055 18.777 0.773 24.080 Atomic orbital electron populations 1.20910 0.87808 1.04518 1.03824 1.20228 0.98254 0.91599 0.95140 1.21255 0.92162 0.99543 1.01460 1.21304 0.95804 0.95694 0.99888 1.17630 0.76706 0.93367 1.12314 1.91448 1.30017 1.97374 1.94732 1.19434 0.92500 0.84528 1.00327 1.86190 1.35950 1.12445 1.88933 1.22669 0.92679 0.80513 1.06797 1.20819 0.88981 0.85394 0.76623 1.90698 1.18208 1.86634 1.51664 1.46080 1.11408 1.04636 1.72380 1.18394 0.89128 0.82346 0.93398 0.98623 1.21918 1.00337 0.99740 0.97428 1.21519 1.00678 0.94675 1.41732 0.90193 1.25862 0.95537 1.01932 0.95443 1.70059 1.12554 1.26294 1.46887 0.85334 0.78281 0.77336 0.78996 1.19460 1.21444 1.18528 1.21379 0.90213 1.01574 1.07457 0.89550 0.90382 0.89409 0.81372 0.82089 0.85414 0.85622 0.75215 0.91411 0.97245 0.93488 0.92512 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 71.23 0.71 -0.08 16 2 C -0.05 -0.73 5.88 -19.88 -0.12 -0.84 16 3 C -0.13 -1.69 9.69 22.28 0.22 -1.47 16 4 C -0.11 -2.03 10.02 22.29 0.22 -1.80 16 5 C 0.02 0.54 7.31 22.45 0.16 0.71 16 6 F -0.16 -5.41 17.11 44.97 0.77 -4.64 16 7 C 0.08 2.18 6.69 22.53 0.15 2.33 16 8 O -0.32 -11.28 9.53 -73.93 -0.70 -11.99 16 9 C 0.05 1.42 5.22 71.24 0.37 1.79 16 10 C 0.50 20.38 7.87 87.66 0.69 21.07 16 11 O -0.59 -31.77 16.16 16.00 0.26 -31.52 16 12 N -0.69 -28.02 5.07 -446.09 -2.26 -30.28 16 13 C 0.27 14.08 2.56 44.24 0.11 14.20 16 14 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 15 C -0.14 -6.93 9.26 71.98 0.67 -6.27 16 16 C -0.55 -28.51 8.73 25.60 0.22 -28.29 16 17 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 18 C 0.01 0.66 5.30 84.66 0.45 1.10 16 19 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 20 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C -0.19 -3.52 8.69 22.36 0.19 -3.33 16 25 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 27 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 28 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.13 2.53 7.67 -2.39 -0.02 2.52 16 31 H 0.13 2.56 7.66 -2.39 -0.02 2.54 16 32 H 0.41 12.87 8.54 -92.71 -0.79 12.07 16 33 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 37 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 Total: -1.00 -77.76 323.87 4.69 -73.07 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.30 Total: 15.70 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.06 Total: -0.88 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.02 Total: -83.08 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.45 Total: -43.50 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.77 Total: -4.64 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -77.76 4.69 -73.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156040338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.786 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds