Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38423 * 122.53796 * 2 1 4 4 C 1.33390 * 114.91764 * 180.27220 * 3 2 1 5 5 S 1.75887 * 109.59564 * 359.76939 * 4 3 2 6 6 C 1.33391 * 122.53753 * 179.82751 * 2 1 3 7 7 C 1.50697 * 125.20337 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.47466 * 89.71858 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99832 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00271 * 179.97438 * 12 10 9 15 15 C 1.50705 * 109.47066 * 90.00086 * 14 12 10 16 16 H 1.08001 * 119.99987 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00127 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00059 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00144 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47052 * 60.00305 * 19 17 15 21 21 H 1.48498 * 109.47378 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47029 * 300.00164 * 19 17 15 23 23 H 1.08994 * 109.47308 * 270.17493 * 1 2 3 24 24 H 1.08997 * 109.47040 * 30.17553 * 1 2 3 25 25 H 1.09003 * 109.46899 * 150.16745 * 1 2 3 26 26 H 1.07997 * 122.54089 * 0.03744 * 3 2 1 27 27 H 1.07998 * 125.20343 * 179.74339 * 4 3 2 28 28 H 1.09002 * 109.47120 * 329.71610 * 7 6 2 29 29 H 1.08998 * 109.46862 * 209.72413 * 7 6 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 34 34 H 1.09003 * 109.46862 * 89.99771 * 13 12 10 35 35 H 1.08996 * 109.47101 * 209.99896 * 13 12 10 36 36 H 1.09003 * 109.46885 * 329.99503 * 13 12 10 37 37 H 1.08998 * 109.47205 * 209.99950 * 14 12 10 38 38 H 1.08997 * 109.47416 * 330.00811 * 14 12 10 39 39 H 0.97001 * 120.00292 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7305 -0.0049 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5192 0.0070 8 6 1.4544 -2.9926 -1.4342 9 6 0.8743 -4.4083 -1.4303 10 6 0.6775 -4.8743 -2.8499 11 8 0.9726 -4.1460 -3.7737 12 7 0.1744 -6.1008 -3.0930 13 6 -0.1816 -6.9808 -1.9771 14 6 -0.0174 -6.5536 -4.4729 15 6 1.2318 -7.2470 -4.9524 16 1 2.0833 -7.3414 -4.2947 17 6 1.2873 -7.7619 -6.2301 18 7 0.2502 -7.6475 -7.0308 19 14 2.8354 -8.6220 -6.8242 20 1 3.1169 -9.7917 -5.9536 21 1 2.6406 -9.0820 -8.2226 22 1 3.9793 -7.6767 -6.7683 23 1 -0.3633 0.0031 1.0276 24 1 -0.3633 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 1.7965 2.1464 0.0006 27 1 4.3078 1.7822 -0.0106 28 1 0.6945 -2.5179 0.5249 29 1 2.3418 -3.1920 0.5187 30 1 2.4136 -2.9939 -1.9520 31 1 0.7663 -2.3196 -1.9457 32 1 1.5621 -5.0815 -0.9187 33 1 -0.0848 -4.4066 -0.9126 34 1 -1.2210 -6.8096 -1.6968 35 1 -0.0531 -8.0203 -2.2789 36 1 0.4644 -6.7672 -1.1255 37 1 -0.8568 -7.2477 -4.5142 38 1 -0.2241 -5.6950 -5.1117 39 1 0.2891 -8.0100 -7.9297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162862140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -44.140193 kcal Electronic energy + Delta-G solvation = -19187.992027 eV Core-core repulsion = 16220.756442 eV Total energy + Delta-G solvation = -2967.235585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66036 -39.40793 -36.65416 -35.66523 -34.70322 -32.02367 -30.44838 -29.35125 -27.35924 -26.64114 -24.83665 -23.53970 -22.40829 -19.94688 -19.22310 -18.70781 -18.21580 -17.54377 -17.02712 -16.80541 -16.24205 -15.93597 -15.41466 -14.94388 -14.49657 -14.39132 -13.95983 -13.87223 -13.65842 -13.44996 -13.26790 -13.17482 -13.10270 -12.80770 -12.75407 -12.57818 -12.49166 -12.41211 -12.19346 -12.10972 -11.74844 -11.68550 -11.44709 -10.65517 -10.56440 -9.46120 -9.39284 -9.21520 -8.23321 -6.38820 0.11434 0.77683 1.14210 1.35237 1.39924 1.47243 1.81198 1.89368 2.33453 2.50436 3.05698 3.76381 3.78401 4.04764 4.11342 4.27086 4.37735 4.45531 4.53586 4.64823 4.69465 4.72493 4.75035 4.78747 4.88200 4.91615 4.99273 5.05441 5.14679 5.15487 5.22946 5.25734 5.39654 5.56051 5.58508 5.71811 5.85756 6.05780 6.69202 6.83112 7.27782 7.53202 8.83490 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.003315 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.009684 B = 8443.333079 C = 8944.319569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.218 4.218 5 S 0.062 5.938 6 C -0.186 4.186 7 C -0.039 4.039 8 C -0.090 4.090 9 C -0.122 4.122 10 C 0.488 3.512 11 O -0.604 6.604 12 N -0.614 5.614 13 C 0.078 3.922 14 C 0.258 3.742 15 C -0.545 4.545 16 H 0.053 0.947 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.277 1.277 22 H -0.279 1.279 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.158 0.842 27 H 0.183 0.817 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.023 0.977 38 H -0.006 1.006 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 12.526 21.180 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.327 5.673 6 C -0.303 4.303 7 C -0.078 4.078 8 C -0.129 4.129 9 C -0.161 4.161 10 C 0.278 3.722 11 O -0.486 6.486 12 N -0.345 5.345 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.204 1.204 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.175 0.825 27 H 0.200 0.800 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.012 0.988 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.201 11.984 20.537 23.992 hybrid contribution -0.478 0.435 -1.150 1.319 sum 2.723 12.419 19.387 23.184 Atomic orbital electron populations 1.20579 0.88545 1.03159 1.03098 1.19216 0.98599 0.91724 1.03643 1.20348 0.93016 1.00022 1.03591 1.25829 1.00336 0.98620 1.10508 1.84383 1.07069 1.02095 1.73787 1.24509 0.95335 0.99899 1.10604 1.20147 1.02363 0.89342 0.95951 1.21210 1.00539 0.94790 0.96347 1.21706 1.05233 0.97913 0.91259 1.21636 0.76514 0.81032 0.93022 1.90634 1.52833 1.56256 1.48891 1.48242 1.62260 1.15540 1.08474 1.21955 1.01494 0.94397 0.88568 1.18720 0.95776 0.93158 0.78707 1.21707 1.00728 1.36762 0.99204 0.92875 1.25894 1.00000 0.96886 0.96521 1.70046 1.31846 1.46767 1.08253 0.85459 0.78746 0.78851 0.77714 1.18262 1.20214 1.20420 0.89745 0.90938 0.91633 0.82500 0.80013 0.87569 0.89495 0.94065 0.92812 0.86661 0.85691 0.90989 0.91911 0.88328 0.95938 0.98769 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.60 71.24 0.68 -0.84 16 2 C -0.12 -2.45 5.80 -20.92 -0.12 -2.57 16 3 C -0.14 -2.61 9.98 21.22 0.21 -2.40 16 4 C -0.22 -4.08 11.23 66.72 0.75 -3.33 16 5 S 0.06 1.34 23.33 -56.49 -1.32 0.03 16 6 C -0.19 -4.09 5.76 24.59 0.14 -3.95 16 7 C -0.04 -0.75 5.07 29.85 0.15 -0.60 16 8 C -0.09 -2.42 4.49 30.59 0.14 -2.29 16 9 C -0.12 -3.14 4.25 29.85 0.13 -3.02 16 10 C 0.49 20.42 7.67 87.66 0.67 21.09 16 11 O -0.60 -32.38 15.56 -3.02 -0.05 -32.43 16 12 N -0.61 -26.29 2.86 -851.13 -2.43 -28.72 16 13 C 0.08 2.24 10.24 127.77 1.31 3.55 16 14 C 0.26 14.31 5.16 85.64 0.44 14.75 16 15 C -0.55 -32.25 9.39 25.60 0.24 -32.01 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -57.38 13.29 21.44 0.28 -57.10 16 19 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 25 H 0.06 1.12 6.95 -2.39 -0.02 1.11 16 26 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.11 1.54 7.33 -2.39 -0.02 1.52 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.34 8.10 -2.39 -0.02 1.33 16 31 H 0.05 1.63 7.79 -2.39 -0.02 1.61 16 32 H 0.12 2.39 7.40 -2.39 -0.02 2.37 16 33 H 0.13 2.31 8.11 -2.39 -0.02 2.29 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 36 H 0.10 2.04 6.44 -2.39 -0.02 2.02 16 37 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 38 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.49 340.46 4.74 -73.75 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.02 Total: 7.57 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.21 Total: -10.79 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.15 Total: -85.82 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.32 Total: 0.03 kcal Total: -78.49 4.74 -73.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162862140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.611 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds