Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00324 * 2 1 4 4 H 1.48509 * 109.47080 * 239.99954 * 3 2 1 5 5 H 1.48500 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46970 * 120.00349 * 3 2 1 7 7 C 1.37881 * 119.99297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99771 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46992 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99737 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99838 * 179.97438 * 13 12 11 16 16 O 1.42895 * 109.46892 * 179.97438 * 15 13 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 13 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99288 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47315 * 60.00460 * 9 7 2 26 26 H 1.08995 * 109.47021 * 299.99960 * 9 7 2 27 27 H 1.08997 * 109.47251 * 60.00184 * 10 9 7 28 28 H 1.08995 * 109.47343 * 299.99885 * 10 9 7 29 29 H 1.08997 * 109.47025 * 59.99986 * 11 10 9 30 30 H 1.09003 * 109.46790 * 299.99789 * 11 10 9 31 31 H 0.96993 * 120.00024 * 359.97438 * 12 11 10 32 32 H 1.09005 * 109.46403 * 60.00348 * 15 13 12 33 33 H 1.08995 * 109.47035 * 300.00415 * 15 13 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9872 -0.0025 12 7 2.4319 -6.1008 -0.0031 13 6 1.9825 -7.3714 -0.0032 14 8 0.7901 -7.5929 -0.0023 15 6 2.9617 -8.5169 -0.0044 16 8 2.2471 -9.7544 -0.0037 17 6 2.9874 -10.8946 -0.0052 18 6 4.3727 -10.8229 -0.0012 19 6 5.1238 -11.9823 -0.0080 20 6 4.4945 -13.2156 -0.0074 21 9 5.2301 -14.3487 -0.0079 22 6 3.1119 -13.2887 -0.0060 23 6 2.3582 -12.1308 -0.0046 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.8724 -3.6049 0.8877 28 1 2.8710 -3.6041 -0.8922 29 1 0.8529 -5.0442 -0.8922 30 1 0.8537 -5.0455 0.8878 31 1 3.3855 -5.9236 -0.0034 32 1 3.5890 -8.4595 0.8852 33 1 3.5877 -8.4589 -0.8948 34 1 4.8638 -9.8610 0.0034 35 1 6.2023 -11.9267 -0.0090 36 1 2.6222 -14.2513 -0.0060 37 1 1.2798 -12.1880 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171504376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = -107.827728 kcal Electronic energy + Delta-G solvation = -20046.867288 eV Core-core repulsion = 16510.656829 eV Total energy + Delta-G solvation = -3536.210459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.16434 -40.68449 -39.38159 -37.43299 -35.48739 -33.41600 -31.79835 -31.43227 -30.19663 -28.58526 -26.41295 -23.72538 -23.10437 -22.44080 -20.89290 -20.14473 -18.82735 -17.75172 -17.50862 -16.71107 -16.49417 -16.35309 -15.86864 -15.54814 -15.09964 -15.05803 -14.51704 -14.28284 -14.03193 -13.90115 -13.41003 -13.39040 -12.69091 -12.64407 -12.32866 -11.91096 -11.79862 -11.32185 -11.28948 -10.92252 -10.80477 -10.66779 -10.00074 -9.93481 -9.63108 -9.45498 -9.18309 -8.95044 -8.50826 -8.40926 -6.05580 -4.09121 0.71724 0.80186 2.34080 2.52610 3.14890 3.29162 3.34329 3.35735 3.51340 3.91889 4.21640 4.32936 4.40680 4.49569 4.64895 4.71014 4.72254 4.89365 5.13692 5.30089 5.43725 5.60407 5.67587 5.68482 5.73726 5.78544 6.06868 6.25250 6.31734 6.51076 6.70942 6.90202 6.92248 7.49978 7.58230 7.70284 7.92424 8.17512 8.33241 8.97206 9.55201 11.05588 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.055569 B = 0.002088 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.754647 B =13405.399504 C =13878.102081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.721 5.721 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.039 3.961 16 O -0.284 6.284 17 C 0.124 3.876 18 C -0.184 4.184 19 C -0.111 4.111 20 C 0.055 3.945 21 F -0.142 7.142 22 C -0.112 4.112 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.813 -24.551 -0.013 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.374 5.374 13 C 0.293 3.707 14 O -0.395 6.395 15 C -0.040 4.040 16 O -0.196 6.196 17 C 0.078 3.922 18 C -0.203 4.203 19 C -0.130 4.130 20 C 0.036 3.964 21 F -0.121 7.121 22 C -0.130 4.130 23 C -0.139 4.139 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.573 -24.594 -0.011 26.391 hybrid contribution 1.347 0.965 -0.002 1.656 sum 10.919 -23.629 -0.013 26.030 Atomic orbital electron populations 1.69957 1.06058 1.26863 1.50300 1.25039 0.94882 0.99343 0.95230 0.86627 0.79549 0.83040 0.78580 1.20244 1.21253 1.20238 1.21150 0.92940 0.90916 1.51262 0.92684 1.19031 0.93842 0.90797 0.97737 1.21902 0.99824 0.93175 1.00974 1.21720 0.91742 0.84673 1.02327 1.46061 1.11117 1.05274 1.74931 1.19927 0.89301 0.83720 0.77768 1.90766 1.16373 1.84417 1.47931 1.22583 0.94735 0.82753 1.03928 1.86207 1.33816 1.11435 1.88165 1.19109 0.89931 0.86803 0.96342 1.21161 0.92499 0.99525 1.07091 1.20941 1.00961 0.90555 1.00542 1.17593 0.89386 0.82227 1.07186 1.91494 1.77085 1.49175 1.94351 1.20981 0.91795 0.99478 1.00792 1.20337 1.01225 0.88572 1.03739 0.92823 0.96222 0.96214 0.92614 0.92619 0.91472 0.91480 0.76634 0.88796 0.88785 0.84266 0.84356 0.83943 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 12 N -0.72 -9.12 5.56 -60.29 -0.33 -9.45 16 13 C 0.51 6.93 7.91 -10.98 -0.09 6.84 16 14 O -0.52 -9.68 16.50 -14.36 -0.24 -9.92 16 15 C 0.04 0.36 5.22 36.01 0.19 0.54 16 16 O -0.28 -3.32 9.67 -39.50 -0.38 -3.71 16 17 C 0.12 1.19 6.69 -39.23 -0.26 0.93 16 18 C -0.18 -1.39 9.04 -39.44 -0.36 -1.75 16 19 C -0.11 -0.83 10.02 -39.53 -0.40 -1.22 16 20 C 0.06 0.47 7.30 -39.42 -0.29 0.18 16 21 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 22 C -0.11 -0.87 10.02 -39.53 -0.40 -1.26 16 23 C -0.12 -1.04 9.99 -39.44 -0.39 -1.44 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 32 H 0.09 0.60 7.65 -51.93 -0.40 0.20 16 33 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.14 0.71 6.30 -52.49 -0.33 0.38 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -33.55 328.96 -7.77 -41.32 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.82 Total: -2.02 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.70 Total: -10.32 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.40 Total: -35.15 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.62 Total: -13.63 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.55 -7.77 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.512 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds