Wall clock time and date at job start Tue Mar 31 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00324 * 2 1 4 4 H 1.48509 * 109.47080 * 239.99954 * 3 2 1 5 5 H 1.48500 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46970 * 120.00349 * 3 2 1 7 7 C 1.37881 * 119.99297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99771 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46992 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99737 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99838 * 179.97438 * 13 12 11 16 16 O 1.42895 * 109.46892 * 179.97438 * 15 13 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 13 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99288 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47315 * 60.00460 * 9 7 2 26 26 H 1.08995 * 109.47021 * 299.99960 * 9 7 2 27 27 H 1.08997 * 109.47251 * 60.00184 * 10 9 7 28 28 H 1.08995 * 109.47343 * 299.99885 * 10 9 7 29 29 H 1.08997 * 109.47025 * 59.99986 * 11 10 9 30 30 H 1.09003 * 109.46790 * 299.99789 * 11 10 9 31 31 H 0.96993 * 120.00024 * 359.97438 * 12 11 10 32 32 H 1.09005 * 109.46403 * 60.00348 * 15 13 12 33 33 H 1.08995 * 109.47035 * 300.00415 * 15 13 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9872 -0.0025 12 7 2.4319 -6.1008 -0.0031 13 6 1.9825 -7.3714 -0.0032 14 8 0.7901 -7.5929 -0.0023 15 6 2.9617 -8.5169 -0.0044 16 8 2.2471 -9.7544 -0.0037 17 6 2.9874 -10.8946 -0.0052 18 6 4.3727 -10.8229 -0.0012 19 6 5.1238 -11.9823 -0.0080 20 6 4.4945 -13.2156 -0.0074 21 9 5.2301 -14.3487 -0.0079 22 6 3.1119 -13.2887 -0.0060 23 6 2.3582 -12.1308 -0.0046 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.8724 -3.6049 0.8877 28 1 2.8710 -3.6041 -0.8922 29 1 0.8529 -5.0442 -0.8922 30 1 0.8537 -5.0455 0.8878 31 1 3.3855 -5.9236 -0.0034 32 1 3.5890 -8.4595 0.8852 33 1 3.5877 -8.4589 -0.8948 34 1 4.8638 -9.8610 0.0034 35 1 6.2023 -11.9267 -0.0090 36 1 2.6222 -14.2513 -0.0060 37 1 1.2798 -12.1880 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171504376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:59 Heat of formation + Delta-G solvation = -129.120718 kcal Electronic energy + Delta-G solvation = -20047.790621 eV Core-core repulsion = 16510.656829 eV Total energy + Delta-G solvation = -3537.133793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.81905 -41.45627 -40.38176 -38.15211 -36.93590 -35.21828 -33.18805 -32.29533 -30.97590 -29.59891 -27.95650 -25.01659 -24.08015 -23.19642 -22.33567 -21.43392 -19.48219 -18.66738 -18.37181 -18.24833 -17.51002 -17.25845 -16.75125 -16.58201 -16.40356 -16.31215 -15.64895 -15.22864 -15.18169 -14.65522 -14.34464 -14.16261 -13.99746 -13.75797 -13.64331 -13.33690 -13.23715 -12.70811 -12.54959 -12.41375 -11.95220 -11.91055 -11.65953 -11.57559 -11.25270 -10.90272 -10.53969 -10.19428 -10.16796 -9.15365 -8.18700 -6.30207 0.15446 0.18052 1.42580 1.45545 1.48649 1.50579 1.53748 2.42249 2.55471 2.64209 3.15121 3.32671 3.54232 3.76847 3.81558 4.02098 4.11022 4.16724 4.18319 4.23409 4.32626 4.55474 4.57087 4.90573 4.94959 4.97566 5.11080 5.14181 5.18446 5.20016 5.37845 5.53027 5.66821 5.71773 5.85247 6.21862 6.24868 6.52490 6.87657 7.17357 7.39452 8.93092 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.055569 B = 0.002088 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.754647 B =13405.399504 C =13878.102081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.705 5.705 13 C 0.506 3.494 14 O -0.579 6.579 15 C 0.044 3.956 16 O -0.316 6.316 17 C 0.107 3.893 18 C -0.178 4.178 19 C -0.110 4.110 20 C 0.039 3.961 21 F -0.150 7.150 22 C -0.112 4.112 23 C -0.135 4.135 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.421 0.579 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.065 -24.717 -0.013 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.359 5.359 13 C 0.292 3.708 14 O -0.459 6.459 15 C -0.034 4.034 16 O -0.230 6.230 17 C 0.062 3.938 18 C -0.196 4.196 19 C -0.129 4.129 20 C 0.020 3.980 21 F -0.128 7.128 22 C -0.131 4.131 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.893 -24.774 -0.011 27.928 hybrid contribution 0.313 0.959 -0.002 1.009 sum 13.206 -23.815 -0.013 27.231 Atomic orbital electron populations 1.70113 1.07966 1.27819 1.51673 1.26049 0.95757 1.03636 0.94869 0.85463 0.78155 0.77896 0.79291 1.18980 1.21387 1.18968 1.21663 0.93815 0.91944 1.50421 0.91323 1.18962 0.94547 0.93108 0.95040 1.21596 0.98388 0.91425 1.02465 1.21263 0.91966 0.85388 1.00798 1.45751 1.11610 1.04259 1.74319 1.20776 0.89341 0.84691 0.75949 1.90746 1.19251 1.85276 1.50586 1.22694 0.93174 0.80152 1.07340 1.86153 1.35489 1.12530 1.88797 1.19306 0.90865 0.86199 0.97444 1.21435 0.91511 1.00859 1.05801 1.21229 1.02173 0.89985 0.99474 1.17862 0.89705 0.82558 1.07861 1.91476 1.77222 1.49656 1.94487 1.21135 0.91791 0.99921 1.00204 1.20480 1.01517 0.88990 1.04337 0.92874 0.99045 0.99036 0.90992 0.91000 0.93198 0.93208 0.74068 0.85155 0.85149 0.81323 0.82152 0.82432 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.10 -3.61 5.27 30.60 0.16 -3.45 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 N -0.71 -16.47 5.56 -463.03 -2.57 -19.04 16 13 C 0.51 13.09 7.91 87.66 0.69 13.78 16 14 O -0.58 -21.98 16.50 16.00 0.26 -21.71 16 15 C 0.04 0.67 5.22 71.24 0.37 1.04 16 16 O -0.32 -6.96 9.67 -73.96 -0.72 -7.67 16 17 C 0.11 1.87 6.69 22.50 0.15 2.02 16 18 C -0.18 -2.11 9.04 22.36 0.20 -1.91 16 19 C -0.11 -1.33 10.02 22.30 0.22 -1.11 16 20 C 0.04 0.61 7.30 22.37 0.16 0.77 16 21 F -0.15 -2.59 17.27 44.97 0.78 -1.81 16 22 C -0.11 -1.63 10.02 22.30 0.22 -1.41 16 23 C -0.13 -2.26 9.99 22.36 0.22 -2.04 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.42 6.18 8.47 -92.71 -0.79 5.40 16 32 H 0.13 1.06 7.65 -2.38 -0.02 1.04 16 33 H 0.13 1.06 7.67 -2.39 -0.02 1.04 16 34 H 0.17 0.88 6.30 -2.91 -0.02 0.86 16 35 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.68 328.96 4.11 -71.57 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.30 Total: 5.30 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.75 Total: -15.33 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.29 Total: -75.36 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.45 Total: -29.39 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.68 4.11 -71.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.550 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds