Wall clock time and date at job start Tue Mar 31 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46922 * 240.00017 * 3 2 1 5 5 H 1.48507 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47041 * 120.00125 * 3 2 1 7 7 C 1.37875 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47116 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46958 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00092 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00139 * 180.02562 * 13 12 11 16 16 O 1.42893 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 13 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47335 * 59.99765 * 9 7 2 26 26 H 1.09001 * 109.47323 * 299.99770 * 9 7 2 27 27 H 1.08996 * 109.47295 * 59.99875 * 10 9 7 28 28 H 1.09009 * 109.46732 * 300.00005 * 10 9 7 29 29 H 1.09002 * 109.47667 * 60.00499 * 11 10 9 30 30 H 1.09001 * 109.47349 * 299.99840 * 11 10 9 31 31 H 0.97000 * 120.00081 * 359.97438 * 12 11 10 32 32 H 1.08994 * 109.46839 * 59.99224 * 15 13 12 33 33 H 1.09001 * 109.46752 * 299.99815 * 15 13 12 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 -0.0007 13 6 1.9831 -7.3713 -0.0019 14 8 0.7907 -7.5929 -0.0019 15 6 2.9624 -8.5168 -0.0019 16 8 2.2480 -9.7543 -0.0027 17 6 2.9884 -10.8945 -0.0033 18 6 4.3732 -10.8234 -0.0038 19 6 5.1239 -11.9835 -0.0051 20 6 4.4962 -13.2155 -0.0053 21 6 3.1158 -13.2909 -0.0047 22 6 2.3591 -12.1329 -0.0035 23 9 1.0101 -12.2062 -0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8904 30 1 0.8533 -5.0451 0.8896 31 1 3.3860 -5.9234 -0.0011 32 1 3.5885 -8.4595 0.8884 33 1 3.5897 -8.4584 -0.8915 34 1 4.8648 -9.8618 -0.0031 35 1 6.2025 -11.9279 -0.0010 36 1 5.0856 -14.1205 -0.0066 37 1 2.6279 -14.2544 -0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:02 Heat of formation + Delta-G solvation = -105.793354 kcal Electronic energy + Delta-G solvation = -20316.553077 eV Core-core repulsion = 16780.430834 eV Total energy + Delta-G solvation = -3536.122242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.98553 -40.59360 -39.34459 -37.62831 -35.47101 -33.40036 -31.53654 -31.10461 -30.58202 -28.69087 -26.41961 -23.59326 -22.93755 -22.61714 -20.86888 -20.11093 -18.90663 -17.54886 -17.27972 -16.81633 -16.50563 -16.35447 -15.71602 -15.63050 -15.15265 -14.95212 -14.74826 -14.48554 -14.04685 -13.79452 -13.28619 -13.00540 -12.66593 -12.31796 -12.11255 -11.90279 -11.82563 -11.58518 -11.46369 -10.91365 -10.78996 -10.65869 -9.97894 -9.92015 -9.43980 -9.37072 -9.17096 -8.92725 -8.58712 -8.39888 -6.04406 -4.08025 0.70711 0.84411 2.30487 2.55299 3.16546 3.29919 3.34989 3.36383 3.47698 3.90374 4.28163 4.36996 4.41745 4.55146 4.67235 4.71991 4.79406 4.81321 5.06903 5.31180 5.53295 5.62406 5.62607 5.70415 5.75215 5.94898 6.08723 6.20698 6.34018 6.52798 6.72567 6.87952 6.93662 7.52168 7.59530 7.71721 7.93608 8.20350 8.34443 8.98330 9.56262 11.06791 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047786 B = 0.002277 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.807637 B =12292.686241 C =12847.443427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.721 5.721 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.039 3.961 16 O -0.280 6.280 17 C 0.099 3.901 18 C -0.185 4.185 19 C -0.089 4.089 20 C -0.131 4.131 21 C -0.117 4.117 22 C 0.072 3.928 23 F -0.129 7.129 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.966 -25.634 -0.004 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.374 5.374 13 C 0.292 3.708 14 O -0.392 6.392 15 C -0.039 4.039 16 O -0.192 6.192 17 C 0.052 3.948 18 C -0.204 4.204 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.135 4.135 22 C 0.052 3.948 23 F -0.107 7.107 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.233 0.767 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.635 -25.633 -0.004 28.150 hybrid contribution 0.931 1.155 -0.002 1.484 sum 12.565 -24.477 -0.005 27.514 Atomic orbital electron populations 1.69953 1.06063 1.26869 1.50307 1.25038 0.94875 0.99337 0.95238 0.86628 0.79548 0.83055 0.78574 1.20245 1.21257 1.20238 1.21148 0.92934 0.90917 1.51248 0.92687 1.19031 0.93844 0.90792 0.97744 1.21900 0.99816 0.93165 1.00958 1.21720 0.91744 0.84657 1.02344 1.46050 1.11091 1.05222 1.75028 1.19909 0.89305 0.83705 0.77862 1.90778 1.16356 1.84368 1.47726 1.22601 0.94769 0.82614 1.03943 1.86250 1.33486 1.11286 1.88221 1.19124 0.90739 0.85896 0.99034 1.21224 0.91431 1.00624 1.07144 1.21038 1.00319 0.91605 0.97782 1.20950 0.93436 0.98336 1.02255 1.21057 0.94452 0.96917 1.01120 1.17040 0.77682 0.91509 1.08574 1.91542 1.28184 1.96929 1.94084 0.92818 0.96225 0.96212 0.92617 0.92625 0.91483 0.91473 0.76654 0.88731 0.88728 0.84298 0.84902 0.84792 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.42 9.11 -34.45 -0.31 -14.74 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.72 -9.51 5.56 -60.29 -0.33 -9.85 16 13 C 0.51 7.36 7.91 -10.98 -0.09 7.27 16 14 O -0.52 -10.23 16.50 -14.35 -0.24 -10.46 16 15 C 0.04 0.40 5.22 36.01 0.19 0.59 16 16 O -0.28 -3.78 9.53 -39.51 -0.38 -4.16 16 17 C 0.10 1.09 6.69 -39.18 -0.26 0.83 16 18 C -0.19 -1.42 9.04 -39.45 -0.36 -1.77 16 19 C -0.09 -0.54 10.04 -39.59 -0.40 -0.94 16 20 C -0.13 -0.80 10.04 -39.57 -0.40 -1.20 16 21 C -0.12 -0.92 10.02 -39.54 -0.40 -1.31 16 22 C 0.07 0.81 7.31 -39.30 -0.29 0.52 16 23 F -0.13 -1.76 17.11 2.25 0.04 -1.72 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 3.82 8.47 -40.82 -0.35 3.47 16 32 H 0.09 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.09 0.66 7.66 -51.93 -0.40 0.26 16 34 H 0.14 0.72 6.30 -52.48 -0.33 0.39 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -34.94 328.78 -7.77 -42.71 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.82 Total: -2.59 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.71 Total: -9.23 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.40 Total: -35.75 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.61 Total: -14.63 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.94 -7.77 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.085 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds