Wall clock time and date at job start Tue Mar 31 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46922 * 240.00017 * 3 2 1 5 5 H 1.48507 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47041 * 120.00125 * 3 2 1 7 7 C 1.37875 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47116 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46958 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00092 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00139 * 180.02562 * 13 12 11 16 16 O 1.42893 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 13 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47335 * 59.99765 * 9 7 2 26 26 H 1.09001 * 109.47323 * 299.99770 * 9 7 2 27 27 H 1.08996 * 109.47295 * 59.99875 * 10 9 7 28 28 H 1.09009 * 109.46732 * 300.00005 * 10 9 7 29 29 H 1.09002 * 109.47667 * 60.00499 * 11 10 9 30 30 H 1.09001 * 109.47349 * 299.99840 * 11 10 9 31 31 H 0.97000 * 120.00081 * 359.97438 * 12 11 10 32 32 H 1.08994 * 109.46839 * 59.99224 * 15 13 12 33 33 H 1.09001 * 109.46752 * 299.99815 * 15 13 12 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 -0.0007 13 6 1.9831 -7.3713 -0.0019 14 8 0.7907 -7.5929 -0.0019 15 6 2.9624 -8.5168 -0.0019 16 8 2.2480 -9.7543 -0.0027 17 6 2.9884 -10.8945 -0.0033 18 6 4.3732 -10.8234 -0.0038 19 6 5.1239 -11.9835 -0.0051 20 6 4.4962 -13.2155 -0.0053 21 6 3.1158 -13.2909 -0.0047 22 6 2.3591 -12.1329 -0.0035 23 9 1.0101 -12.2062 -0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8904 30 1 0.8533 -5.0451 0.8896 31 1 3.3860 -5.9234 -0.0011 32 1 3.5885 -8.4595 0.8884 33 1 3.5897 -8.4584 -0.8915 34 1 4.8648 -9.8618 -0.0031 35 1 6.2025 -11.9279 -0.0010 36 1 5.0856 -14.1205 -0.0066 37 1 2.6279 -14.2544 -0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171506616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:02 Heat of formation + Delta-G solvation = -129.091463 kcal Electronic energy + Delta-G solvation = -20317.563359 eV Core-core repulsion = 16780.430834 eV Total energy + Delta-G solvation = -3537.132524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.84504 -41.43679 -40.36528 -38.35248 -36.97681 -35.24062 -33.20981 -31.68069 -31.35994 -29.75835 -28.01106 -25.04373 -23.77853 -23.39367 -22.36225 -21.45311 -19.63168 -18.67159 -18.24733 -18.05342 -17.66200 -17.33642 -16.80593 -16.73505 -16.42832 -16.18049 -15.79549 -15.37722 -15.13339 -15.10016 -14.29973 -14.09311 -13.79611 -13.68550 -13.63215 -13.24633 -12.71601 -12.66900 -12.55993 -12.42909 -12.17029 -12.14859 -11.67655 -11.60288 -11.26927 -10.94738 -10.54879 -10.21184 -9.93764 -9.25696 -8.19326 -6.31187 0.13601 0.25945 1.41462 1.43713 1.44293 1.45268 1.53206 2.41420 2.55704 2.61773 3.14423 3.26570 3.51446 3.80985 3.91557 4.02765 4.05750 4.14620 4.20524 4.29665 4.35165 4.52010 4.53338 4.92711 4.94698 4.98837 5.10181 5.16792 5.27330 5.34563 5.44108 5.51611 5.67371 5.70061 5.84022 6.18811 6.21901 6.48403 6.86637 7.13693 7.38605 8.92599 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047786 B = 0.002277 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.807637 B =12292.686241 C =12847.443427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.505 3.495 14 O -0.581 6.581 15 C 0.046 3.954 16 O -0.324 6.324 17 C 0.072 3.928 18 C -0.182 4.182 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.118 4.118 22 C 0.025 3.975 23 F -0.157 7.157 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.422 0.578 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.558 -26.330 -0.004 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.088 0.912 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.357 5.357 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.032 4.032 16 O -0.238 6.238 17 C 0.027 3.973 18 C -0.200 4.200 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.137 4.137 22 C 0.006 3.994 23 F -0.136 7.136 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.260 0.740 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.303 -26.343 -0.004 30.979 hybrid contribution -0.449 1.282 -0.002 1.359 sum 15.853 -25.060 -0.005 29.654 Atomic orbital electron populations 1.70114 1.08023 1.27855 1.51677 1.26065 0.95755 1.03703 0.94832 0.85446 0.78143 0.77793 0.79338 1.18914 1.21395 1.18900 1.21658 0.93836 0.91884 1.50448 0.91239 1.18963 0.94545 0.93160 0.94995 1.21593 0.98376 0.91257 1.02543 1.21277 0.91996 0.85458 1.00741 1.45726 1.11641 1.04100 1.74259 1.20790 0.89311 0.84789 0.76005 1.90754 1.19412 1.85301 1.50594 1.22719 0.93152 0.79834 1.07463 1.86171 1.35725 1.12726 1.89129 1.19415 0.92133 0.84849 1.00953 1.21592 0.89817 1.02713 1.05925 1.21542 1.02054 0.90830 0.95495 1.21417 0.92633 0.99991 1.00199 1.21343 0.95424 0.96441 1.00489 1.17677 0.76934 0.93263 1.11546 1.91454 1.30367 1.97143 1.94670 0.92860 0.99114 0.99099 0.90890 0.90901 0.93299 0.93285 0.73963 0.84944 0.84937 0.81480 0.81281 0.81510 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.13 4.44 5.67 86.38 0.49 4.93 16 12 N -0.70 -17.57 5.56 -463.05 -2.57 -20.14 16 13 C 0.50 14.39 7.91 87.66 0.69 15.08 16 14 O -0.58 -24.06 16.50 16.01 0.26 -23.80 16 15 C 0.05 0.82 5.22 71.24 0.37 1.19 16 16 O -0.32 -8.78 9.53 -74.02 -0.71 -9.49 16 17 C 0.07 1.55 6.69 22.53 0.15 1.70 16 18 C -0.18 -2.17 9.04 22.36 0.20 -1.97 16 19 C -0.08 -0.63 10.04 22.26 0.22 -0.41 16 20 C -0.12 -1.08 10.04 22.28 0.22 -0.86 16 21 C -0.12 -1.73 10.02 22.29 0.22 -1.51 16 22 C 0.03 0.59 7.31 22.45 0.16 0.75 16 23 F -0.16 -4.70 17.11 44.97 0.77 -3.93 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.42 6.69 8.47 -92.71 -0.79 5.90 16 32 H 0.13 1.35 7.66 -2.39 -0.02 1.33 16 33 H 0.13 1.35 7.66 -2.39 -0.02 1.33 16 34 H 0.17 0.90 6.30 -2.91 -0.02 0.88 16 35 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -82.12 328.78 4.11 -78.00 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.30 Total: 3.66 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 3.75 Total: -12.68 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.29 Total: -77.11 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.44 Total: -33.28 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.77 Total: -3.93 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -82.12 4.11 -78.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.090 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds