Wall clock time and date at job start Tue Mar 31 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48499 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47346 * 300.00157 * 3 2 1 6 6 H 1.48501 * 109.47057 * 60.00012 * 3 2 1 7 7 C 1.37878 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47356 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46990 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46708 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99893 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 11 16 16 O 1.42905 * 109.47007 * 179.97438 * 15 13 12 17 17 C 1.35894 * 117.00317 * 179.97438 * 16 15 13 18 18 C 1.38767 * 120.04014 * 359.71861 * 17 16 15 19 19 C 1.38134 * 119.99591 * 179.74448 * 18 17 16 20 20 C 1.38252 * 120.07456 * 0.53690 * 19 18 17 21 21 C 1.38471 * 120.09115 * 359.74618 * 20 19 18 22 22 F 1.35096 * 120.00542 * 180.02562 * 21 20 19 23 23 C 1.38394 * 119.99904 * 359.97050 * 21 20 19 24 24 H 0.96996 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47060 * 60.00085 * 9 7 2 26 26 H 1.08999 * 109.47347 * 300.01041 * 9 7 2 27 27 H 1.09000 * 109.46641 * 60.00225 * 10 9 7 28 28 H 1.08994 * 109.47288 * 300.00526 * 10 9 7 29 29 H 1.08998 * 109.46692 * 60.00542 * 11 10 9 30 30 H 1.08994 * 109.47584 * 300.00406 * 11 10 9 31 31 H 0.97005 * 120.00261 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 34 34 H 1.08004 * 120.00724 * 0.02562 * 18 17 16 35 35 H 1.07992 * 119.96609 * 180.27480 * 19 18 17 36 36 H 1.08005 * 119.95689 * 179.76070 * 20 19 18 37 37 H 1.08004 * 120.03573 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3713 0.0008 14 8 0.7906 -7.5929 0.0000 15 6 2.9624 -8.5167 -0.0047 16 8 2.2479 -9.7543 -0.0028 17 6 2.9880 -10.8940 -0.0079 18 6 4.3738 -10.8224 -0.0203 19 6 5.1252 -11.9814 -0.0200 20 6 4.4983 -13.2136 -0.0186 21 6 3.1156 -13.2890 -0.0121 22 9 2.5048 -14.4940 -0.0102 23 6 2.3594 -12.1300 -0.0064 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 0.8534 -5.0450 -0.8897 30 1 0.8539 -5.0446 0.8902 31 1 3.3860 -5.9233 0.0011 32 1 3.5853 -8.4577 -0.8972 33 1 3.5927 -8.4601 0.8827 34 1 4.8649 -9.8605 -0.0256 35 1 6.2037 -11.9251 -0.0252 36 1 5.0877 -14.1187 -0.0223 37 1 1.2810 -12.1881 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:06 Heat of formation + Delta-G solvation = -107.801517 kcal Electronic energy + Delta-G solvation = -20082.530876 eV Core-core repulsion = 16546.321553 eV Total energy + Delta-G solvation = -3536.209323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.28390 -40.70192 -39.38095 -37.48035 -35.49288 -33.41997 -31.70387 -31.24772 -30.31228 -28.78761 -26.42578 -23.49139 -23.26744 -22.46084 -20.89206 -20.13990 -19.02762 -17.55938 -16.74797 -16.72283 -16.67861 -16.43309 -16.01142 -15.92790 -15.44602 -15.09495 -14.54423 -14.38286 -14.13338 -13.89525 -13.43748 -13.00348 -12.69003 -12.34793 -12.29213 -11.90064 -11.81442 -11.54293 -11.40016 -10.96125 -10.81149 -10.61858 -10.00603 -9.94313 -9.46176 -9.31674 -9.15966 -8.95382 -8.73762 -8.41855 -6.06088 -4.09494 0.69279 0.85710 2.26716 2.52124 3.15564 3.26949 3.34579 3.37434 3.43701 3.97267 4.25476 4.40462 4.48093 4.53044 4.60116 4.68635 4.70129 4.90781 4.95532 5.29836 5.50836 5.60277 5.64687 5.68420 5.77656 5.86686 6.06811 6.25064 6.31548 6.50983 6.70671 6.87522 6.92056 7.49497 7.58545 7.70065 7.92221 8.17101 8.33016 8.97367 9.55036 11.05183 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.058046 B = 0.002110 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.259801 B =13264.576145 C =13715.777619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.721 5.721 13 C 0.509 3.491 14 O -0.519 6.519 15 C 0.040 3.960 16 O -0.283 6.283 17 C 0.163 3.837 18 C -0.222 4.222 19 C -0.049 4.049 20 C -0.195 4.195 21 C 0.140 3.860 22 F -0.134 7.134 23 C -0.188 4.188 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.332 -24.463 -0.036 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.374 5.374 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.039 4.039 16 O -0.195 6.195 17 C 0.116 3.884 18 C -0.241 4.241 19 C -0.067 4.067 20 C -0.214 4.214 21 C 0.120 3.880 22 F -0.112 7.112 23 C -0.207 4.207 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.042 -24.512 -0.035 26.885 hybrid contribution 1.008 0.939 0.003 1.378 sum 12.051 -23.573 -0.032 26.475 Atomic orbital electron populations 1.69970 1.06066 1.26650 1.50492 1.25041 0.94872 0.99368 0.95251 0.86518 0.80009 0.83713 0.77631 1.19763 1.20982 1.20989 1.21223 0.93017 0.90887 1.50991 0.92569 1.19042 0.93856 0.90834 0.97751 1.21900 0.99817 0.93160 1.00982 1.21720 0.91740 0.84667 1.02339 1.46058 1.11122 1.05245 1.74934 1.19923 0.89297 0.83727 0.77806 1.90771 1.16371 1.84406 1.47893 1.22602 0.94721 0.82513 1.04069 1.86187 1.33995 1.11510 1.87800 1.18666 0.89741 0.86127 0.93856 1.21377 0.92487 1.00387 1.09868 1.20793 1.00204 0.90783 0.94938 1.21066 0.92530 0.99634 1.08142 1.17278 0.90593 0.79946 1.00170 1.91524 1.83600 1.42508 1.93615 1.20290 1.01718 0.88872 1.09856 0.92928 0.96205 0.96215 0.92614 0.92604 0.91467 0.91476 0.76621 0.88641 0.88667 0.84546 0.84510 0.84558 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.72 -9.12 5.56 -60.30 -0.33 -9.46 16 13 C 0.51 6.96 7.91 -10.98 -0.09 6.88 16 14 O -0.52 -9.77 16.50 -14.35 -0.24 -10.00 16 15 C 0.04 0.37 5.22 36.00 0.19 0.55 16 16 O -0.28 -3.41 9.67 -39.31 -0.38 -3.79 16 17 C 0.16 1.63 6.68 -39.23 -0.26 1.36 16 18 C -0.22 -1.63 9.04 -39.42 -0.36 -1.99 16 19 C -0.05 -0.31 10.04 -39.61 -0.40 -0.71 16 20 C -0.19 -1.41 10.02 -39.49 -0.40 -1.81 16 21 C 0.14 1.29 7.30 -39.44 -0.29 1.00 16 22 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 23 C -0.19 -1.89 9.97 -39.37 -0.39 -2.28 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 32 H 0.10 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.10 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.14 0.67 6.30 -52.48 -0.33 0.34 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -33.69 328.96 -7.76 -41.45 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.82 Total: -2.15 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.70 Total: -10.12 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.40 Total: -35.18 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.62 Total: -13.79 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.69 -7.76 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.351 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds