Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 S 1.70624 * 124.52474 * 270.02453 * 3 2 1 5 5 C 1.75828 * 91.56226 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45530 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 C 1.36643 * 109.08762 * 0.24358 * 5 4 3 21 21 C 1.33815 * 124.52172 * 90.00297 * 3 2 1 22 22 C 1.50696 * 122.44892 * 0.04309 * 21 3 2 23 23 H 1.09003 * 109.46885 * 299.99864 * 1 2 3 24 24 H 1.08998 * 109.46911 * 59.99917 * 1 2 3 25 25 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46885 * 240.00135 * 2 1 3 27 27 H 1.08998 * 109.46911 * 120.00083 * 2 1 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 34 34 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 35 35 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 36 36 H 1.07995 * 123.35716 * 179.75353 * 20 5 4 37 37 H 1.08998 * 109.47556 * 90.00272 * 22 21 3 38 38 H 1.09000 * 109.47167 * 209.99944 * 22 21 3 39 39 H 1.08994 * 109.47391 * 329.99726 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7237 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3653 5.1949 -2.3215 9 6 3.8136 6.4813 -2.8604 10 6 3.7891 6.4302 -4.3894 11 6 4.2567 7.7740 -4.9521 12 6 4.2332 7.7234 -6.4581 13 1 3.9161 6.8230 -6.9633 14 6 4.6166 8.8265 -7.1910 15 7 5.0032 9.9227 -6.5759 16 14 4.5868 8.7641 -9.0577 17 1 3.2576 9.2104 -9.5468 18 1 5.6400 9.6596 -9.5999 19 1 4.8390 7.3725 -9.5105 20 6 2.7418 3.4128 0.8775 21 6 2.2852 2.1357 1.1025 22 6 2.0897 1.5796 2.4894 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1115 4.4786 -2.9243 29 1 3.1491 7.2724 -2.5127 30 1 4.8290 6.6840 -2.5199 31 1 4.4536 5.6393 -4.7370 32 1 2.7737 6.2277 -4.7300 33 1 3.5919 8.5646 -4.6044 34 1 5.2721 7.9770 -4.6116 35 1 5.2733 10.6987 -7.0914 36 1 2.9909 4.1026 1.6702 37 1 3.0116 1.1036 2.8233 38 1 1.8307 2.3888 3.1722 39 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -41.080379 kcal Electronic energy + Delta-G solvation = -18607.726210 eV Core-core repulsion = 15640.623309 eV Total energy + Delta-G solvation = -2967.102901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70738 -38.58266 -35.44049 -34.07363 -33.33048 -31.39934 -30.46605 -27.88533 -26.87746 -24.76937 -23.03274 -22.39613 -20.83702 -20.26345 -18.79437 -17.92740 -16.64961 -16.17128 -15.62238 -15.40489 -14.77839 -14.59774 -14.47357 -14.32163 -13.87960 -13.65815 -13.32252 -12.93336 -12.50368 -12.41651 -12.28902 -12.02480 -11.86672 -11.65828 -11.64376 -11.46347 -10.99235 -10.90859 -10.74836 -10.60293 -10.05747 -9.88099 -9.42974 -9.12912 -8.97085 -8.75698 -8.55602 -8.37470 -6.02006 -4.05177 0.35630 1.27655 1.69993 2.17759 3.26261 3.30419 3.30910 3.37319 3.40394 4.33072 4.44159 4.61624 4.73972 4.86965 4.96265 5.03836 5.13513 5.33536 5.33794 5.39673 5.44476 5.54600 5.61875 5.63760 5.75776 5.78501 5.82567 6.09850 6.14417 6.24234 6.41076 6.57939 6.79692 6.98156 7.60950 7.63088 7.75414 7.96560 8.27041 8.37957 9.01403 9.59035 11.09318 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.002787 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.962058 B =10043.051819 C =10784.768113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.199 4.199 4 S 0.198 5.802 5 C -0.258 4.258 6 C 0.583 3.417 7 O -0.533 6.533 8 N -0.721 5.721 9 C 0.117 3.883 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.053 4.053 21 C -0.121 4.121 22 C -0.093 4.093 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.395 0.605 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.152 0.848 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 -21.728 15.409 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.319 4.319 4 S 0.468 5.532 5 C -0.379 4.379 6 C 0.369 3.631 7 O -0.412 6.412 8 N -0.371 5.371 9 C -0.005 4.005 10 C -0.160 4.160 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.086 4.086 21 C -0.134 4.134 22 C -0.152 4.152 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.229 0.771 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.170 0.830 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.876 -21.156 14.295 26.720 hybrid contribution 0.020 0.056 0.169 0.179 sum -7.856 -21.100 14.463 26.760 Atomic orbital electron populations 1.21799 0.94101 1.02090 1.02682 1.20126 0.96336 0.89441 1.03427 1.24036 1.08415 1.02066 0.97363 1.83004 1.60257 1.02463 1.07519 1.24636 1.15732 0.99449 0.98050 1.16986 0.77984 0.85507 0.82639 1.90827 1.49474 1.42768 1.58106 1.46109 1.67573 1.17575 1.05851 1.21718 1.00000 0.83130 0.95695 1.21909 1.01146 1.02349 0.90563 1.19030 0.96794 0.90021 0.95512 1.21200 1.44569 0.98797 0.91519 0.92626 1.25030 0.95284 0.95515 0.98641 1.69963 1.44714 1.03106 1.35496 0.86577 0.77724 0.77925 0.85661 1.20653 1.21197 1.19886 1.20611 0.96985 0.95744 0.95301 1.18651 1.04252 0.93979 0.96484 1.20507 1.02029 1.01016 0.91626 0.92188 0.92284 0.91909 0.90645 0.89824 0.77093 0.91421 0.91407 0.92633 0.92649 0.96214 0.96202 0.92910 0.83045 0.91251 0.91327 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.05 -0.35 5.72 -27.88 -0.16 -0.51 16 3 C -0.20 -1.81 5.53 -35.86 -0.20 -2.00 16 4 S 0.20 2.00 22.10 -107.50 -2.38 -0.38 16 5 C -0.26 -3.42 6.45 -36.79 -0.24 -3.65 16 6 C 0.58 9.58 7.78 -12.89 -0.10 9.48 16 7 O -0.53 -10.60 16.84 5.19 0.09 -10.52 16 8 N -0.72 -11.23 5.55 -61.64 -0.34 -11.58 16 9 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.05 -0.64 9.80 -40.43 -0.40 -1.03 16 21 C -0.12 -1.17 5.78 -106.45 -0.62 -1.78 16 22 C -0.09 -0.64 9.55 36.00 0.34 -0.29 16 23 H 0.06 0.36 7.81 -51.93 -0.41 -0.05 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.45 7.25 -51.93 -0.38 0.07 16 28 H 0.40 5.19 7.59 -40.82 -0.31 4.89 16 29 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 39 H 0.07 0.38 6.86 -51.93 -0.36 0.02 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -32.39 342.80 -9.52 -41.91 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.06 Total: -1.25 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.71 Total: -13.70 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.39 Total: -37.75 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.39 -9.52 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.833 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds