Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 S 1.70624 * 124.52474 * 270.02453 * 3 2 1 5 5 C 1.75828 * 91.56226 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45530 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 C 1.36643 * 109.08762 * 0.24358 * 5 4 3 21 21 C 1.33815 * 124.52172 * 90.00297 * 3 2 1 22 22 C 1.50696 * 122.44892 * 0.04309 * 21 3 2 23 23 H 1.09003 * 109.46885 * 299.99864 * 1 2 3 24 24 H 1.08998 * 109.46911 * 59.99917 * 1 2 3 25 25 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46885 * 240.00135 * 2 1 3 27 27 H 1.08998 * 109.46911 * 120.00083 * 2 1 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 34 34 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 35 35 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 36 36 H 1.07995 * 123.35716 * 179.75353 * 20 5 4 37 37 H 1.08998 * 109.47556 * 90.00272 * 22 21 3 38 38 H 1.09000 * 109.47167 * 209.99944 * 22 21 3 39 39 H 1.08994 * 109.47391 * 329.99726 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7237 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3653 5.1949 -2.3215 9 6 3.8136 6.4813 -2.8604 10 6 3.7891 6.4302 -4.3894 11 6 4.2567 7.7740 -4.9521 12 6 4.2332 7.7234 -6.4581 13 1 3.9161 6.8230 -6.9633 14 6 4.6166 8.8265 -7.1910 15 7 5.0032 9.9227 -6.5759 16 14 4.5868 8.7641 -9.0577 17 1 3.2576 9.2104 -9.5468 18 1 5.6400 9.6596 -9.5999 19 1 4.8390 7.3725 -9.5105 20 6 2.7418 3.4128 0.8775 21 6 2.2852 2.1357 1.1025 22 6 2.0897 1.5796 2.4894 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1115 4.4786 -2.9243 29 1 3.1491 7.2724 -2.5127 30 1 4.8290 6.6840 -2.5199 31 1 4.4536 5.6393 -4.7370 32 1 2.7737 6.2277 -4.7300 33 1 3.5919 8.5646 -4.6044 34 1 5.2721 7.9770 -4.6116 35 1 5.2733 10.6987 -7.0914 36 1 2.9909 4.1026 1.6702 37 1 3.0116 1.1036 2.8233 38 1 1.8307 2.3888 3.1722 39 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -60.400133 kcal Electronic energy + Delta-G solvation = -18608.563978 eV Core-core repulsion = 15640.623309 eV Total energy + Delta-G solvation = -2967.940669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92297 -39.47264 -37.03313 -35.25375 -34.73136 -33.14450 -31.30824 -29.00923 -28.16523 -26.05075 -24.42225 -23.24047 -22.41546 -21.60056 -19.71291 -18.91934 -18.54424 -17.35405 -16.89813 -16.82823 -16.44496 -15.68896 -15.52331 -15.24976 -15.07469 -14.59063 -14.29442 -14.04685 -13.78968 -13.59651 -13.44489 -13.14434 -13.01882 -12.77735 -12.61876 -12.58672 -12.41472 -12.22138 -12.06456 -11.71868 -11.65889 -11.64916 -11.29946 -11.10361 -10.56206 -10.31276 -9.66652 -9.34837 -8.20148 -6.31829 -0.55318 0.42924 0.88173 1.29502 1.41543 1.43028 1.54037 2.03068 2.08254 2.42081 3.13662 3.66871 3.75018 4.08489 4.11573 4.15639 4.18902 4.40783 4.45324 4.49632 4.50934 4.81650 4.85044 4.86824 4.89192 4.92667 5.01821 5.06478 5.12445 5.13992 5.29454 5.31399 5.41734 5.49853 5.54423 5.68023 5.82578 6.20706 6.36144 6.85289 7.01169 7.37810 8.92082 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.002787 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.962058 B =10043.051819 C =10784.768113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.185 4.185 4 S 0.228 5.772 5 C -0.300 4.300 6 C 0.583 3.417 7 O -0.579 6.579 8 N -0.712 5.712 9 C 0.129 3.871 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.050 4.050 21 C -0.133 4.133 22 C -0.091 4.091 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.409 0.591 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 -24.943 14.832 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.305 4.305 4 S 0.498 5.502 5 C -0.420 4.420 6 C 0.371 3.629 7 O -0.461 6.461 8 N -0.363 5.363 9 C 0.006 3.994 10 C -0.141 4.141 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.085 4.085 21 C -0.145 4.145 22 C -0.150 4.150 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.245 0.755 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.995 -24.416 13.701 29.407 hybrid contribution 0.332 0.977 0.416 1.113 sum -8.663 -23.439 14.117 28.701 Atomic orbital electron populations 1.21805 0.93399 1.03161 1.02242 1.20308 0.96787 0.87555 1.04862 1.24524 1.06252 1.03104 0.96617 1.82826 1.59427 1.00668 1.07297 1.24353 1.18907 0.99496 0.99236 1.17411 0.76964 0.86287 0.82243 1.90790 1.51621 1.44683 1.59028 1.45872 1.67388 1.16914 1.06125 1.21341 0.99146 0.84242 0.94676 1.21623 1.01890 0.99339 0.91214 1.18935 0.94863 0.92403 0.95131 1.21672 1.44257 0.99277 0.92730 0.91494 1.26033 0.94766 0.95065 1.04259 1.70110 1.45793 1.03973 1.37685 0.85400 0.77913 0.78539 0.78908 1.19789 1.21016 1.18384 1.20805 0.96178 0.96724 0.94767 1.18858 1.04381 0.93083 0.98212 1.20574 1.03149 1.01455 0.89826 0.92344 0.93068 0.90134 0.89575 0.88056 0.75453 0.92699 0.92675 0.91271 0.91274 0.98833 0.98825 0.92781 0.83763 0.90283 0.91166 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 71.98 0.71 -0.52 16 2 C -0.06 -0.52 5.72 29.85 0.17 -0.35 16 3 C -0.18 -2.89 5.53 24.68 0.14 -2.75 16 4 S 0.23 4.20 22.10 -56.49 -1.25 2.95 16 5 C -0.30 -7.90 6.45 24.08 0.16 -7.74 16 6 C 0.58 19.63 7.78 86.42 0.67 20.31 16 7 O -0.58 -24.15 16.84 -4.36 -0.07 -24.23 16 8 N -0.71 -22.31 5.55 -467.15 -2.59 -24.90 16 9 C 0.13 4.83 5.67 86.38 0.49 5.32 16 10 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 13 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 16 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 C -0.05 -1.19 9.80 21.72 0.21 -0.98 16 21 C -0.13 -2.34 5.78 -21.05 -0.12 -2.46 16 22 C -0.09 -1.03 9.55 71.23 0.68 -0.35 16 23 H 0.06 0.52 7.81 -2.39 -0.02 0.50 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 25 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.66 7.25 -2.39 -0.02 0.64 16 28 H 0.41 10.39 7.59 -92.71 -0.70 9.68 16 29 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 34 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 39 H 0.08 0.66 6.86 -2.39 -0.02 0.65 16 Total: -1.00 -71.37 342.80 2.84 -68.53 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.33 Total: 10.84 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.11 Total: -21.95 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.31 Total: -82.13 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.25 Total: 2.95 kcal Total: -71.37 2.84 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.128 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds