Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46783 * 299.99935 * 3 2 1 6 6 H 1.48502 * 109.46723 * 59.99691 * 3 2 1 7 7 C 1.37878 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47249 * 179.97438 * 9 7 2 11 11 C 1.34974 * 125.97347 * 125.00227 * 10 9 7 12 12 C 1.35245 * 107.85756 * 179.97438 * 11 10 9 13 13 C 1.40405 * 107.86800 * 0.02562 * 12 11 10 14 14 N 1.40158 * 125.97232 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99778 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99911 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.52024 * 55.00337 * 17 15 14 19 19 C 1.53146 * 109.52584 * 294.87247 * 17 15 14 20 20 O 1.43074 * 109.15049 * 184.78468 * 19 17 15 21 21 C 1.43078 * 113.59178 * 57.95226 * 20 19 17 22 22 C 1.53146 * 109.15192 * 302.04694 * 21 20 19 23 23 O 1.43068 * 109.52297 * 175.13377 * 17 15 14 24 24 N 1.31218 * 108.05569 * 359.97438 * 13 12 11 25 25 H 0.96998 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46695 * 60.00179 * 9 7 2 27 27 H 1.09001 * 109.47351 * 300.00227 * 9 7 2 28 28 H 1.07998 * 126.07144 * 0.24593 * 11 10 9 29 29 H 1.08001 * 126.06103 * 179.97438 * 12 11 10 30 30 H 0.96995 * 120.00284 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.52129 * 304.68771 * 19 17 15 32 32 H 1.08997 * 109.52094 * 64.81388 * 19 17 15 33 33 H 1.09001 * 109.52306 * 61.94979 * 21 20 19 34 34 H 1.08996 * 109.52469 * 182.07921 * 21 20 19 35 35 H 1.09002 * 109.52386 * 175.21464 * 22 21 20 36 36 H 1.09002 * 109.52070 * 295.34486 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.2420 -4.6224 0.8953 12 6 3.2603 -5.4430 0.5505 13 6 3.8686 -4.9149 -0.5995 14 7 4.9639 -5.4661 -1.2784 15 6 5.5279 -6.6066 -0.8336 16 8 5.0874 -7.1561 0.1539 17 6 6.7053 -7.1996 -1.5639 18 1 7.4954 -6.4536 -1.6475 19 6 6.2692 -7.6423 -2.9637 20 8 7.3617 -8.3042 -3.6082 21 6 7.8489 -9.4399 -2.8872 22 6 8.2849 -8.9972 -1.4875 23 8 7.1934 -8.3344 -0.8422 24 7 3.2318 -3.8157 -0.9281 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8898 27 1 0.6240 -2.5567 0.8903 28 1 1.5754 -4.7543 1.7347 29 1 3.5539 -6.3441 1.0684 30 1 5.3164 -5.0265 -2.0679 31 1 5.4250 -8.3271 -2.8826 32 1 5.9756 -6.7695 -3.5467 33 1 7.0578 -10.1851 -2.8037 34 1 8.6997 -9.8696 -3.4160 35 1 8.5774 -9.8702 -0.9039 36 1 9.1299 -8.3134 -1.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172091726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -33.049289 kcal Electronic energy + Delta-G solvation = -21451.485198 eV Core-core repulsion = 17938.437337 eV Total energy + Delta-G solvation = -3513.047861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99325 -40.29179 -38.85937 -36.39016 -34.82985 -33.44792 -32.23693 -30.86324 -29.38269 -28.57530 -26.69919 -25.41981 -23.30490 -22.38900 -21.40750 -20.32595 -19.65664 -17.69808 -17.32581 -16.80898 -16.61206 -16.52294 -16.18258 -15.77401 -15.26745 -15.02157 -14.73053 -14.19305 -13.95447 -13.68632 -13.44767 -12.83149 -12.67438 -12.36408 -12.29044 -12.00785 -11.81041 -11.22443 -11.07388 -10.98609 -10.87051 -10.49337 -10.28569 -10.04164 -9.72334 -9.51792 -9.50062 -8.66052 -8.19162 -7.53352 -6.26669 -4.31764 2.15957 2.34281 2.85872 3.21070 3.25387 3.28675 3.34138 3.41548 3.62510 3.86915 4.11747 4.29922 4.45118 4.49262 4.57299 4.69948 4.80259 5.03438 5.08755 5.17471 5.32095 5.35994 5.49558 5.74034 6.17300 6.40532 6.45707 6.48741 6.62619 6.82532 7.02284 7.30414 7.50386 7.68509 7.85524 8.00108 8.11687 8.57535 8.77691 9.34144 10.82197 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033827 B = 0.003196 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.546696 B = 8757.530561 C = 9130.839915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.287 4.287 13 C 0.256 3.744 14 N -0.627 5.627 15 C 0.526 3.474 16 O -0.490 6.490 17 C 0.044 3.956 18 H 0.099 0.901 19 C 0.036 3.964 20 O -0.372 6.372 21 C 0.020 3.980 22 C 0.024 3.976 23 O -0.349 6.349 24 N -0.301 5.301 25 H 0.267 0.733 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.815 -16.466 -4.932 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.319 4.319 13 C 0.003 3.997 14 N -0.276 5.276 15 C 0.310 3.690 16 O -0.361 6.361 17 C -0.018 4.018 18 H 0.117 0.883 19 C -0.042 4.042 20 O -0.291 6.291 21 C -0.057 4.057 22 C -0.053 4.053 23 O -0.267 6.267 24 N -0.132 5.132 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.185 -15.705 -5.024 21.113 hybrid contribution 0.618 0.554 0.205 0.855 sum 13.803 -15.151 -4.819 21.055 Atomic orbital electron populations 1.69923 1.06056 1.27565 1.49785 1.24949 0.94985 0.99582 0.94574 0.86270 0.80058 0.82432 0.77737 1.19550 1.20672 1.20752 1.21293 0.94038 0.89344 1.52027 0.91225 1.19776 0.85598 0.81274 0.99354 1.49106 1.23105 1.19683 1.18013 1.22577 1.00244 0.90123 0.96760 1.21527 1.02159 1.06456 1.01722 1.19025 0.91374 0.94482 0.94793 1.42271 1.30143 1.24660 1.30520 1.19808 0.83785 0.80249 0.85165 1.90683 1.61128 1.59630 1.24701 1.22469 0.96255 0.90759 0.92290 0.88334 1.23189 0.89974 0.99246 0.91784 1.88132 1.50488 1.43706 1.46735 1.23336 1.00556 0.88709 0.93125 1.23361 0.89356 0.98416 0.94200 1.88237 1.50591 1.42168 1.45674 1.77334 1.03618 1.16058 1.16222 0.92347 0.93645 0.92449 0.81358 0.82290 0.75311 0.91004 0.86743 0.91689 0.87368 0.87053 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.58 9.24 -34.44 -0.32 -14.90 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.26 6.47 6.26 -5.20 -0.03 6.43 16 10 N -0.32 -7.28 3.67 -62.56 -0.23 -7.51 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -5.66 9.60 -39.83 -0.38 -6.05 16 13 C 0.26 5.04 8.11 -154.39 -1.25 3.79 16 14 N -0.63 -9.30 5.41 -11.13 -0.06 -9.36 16 15 C 0.53 7.62 7.15 -10.98 -0.08 7.54 16 16 O -0.49 -8.95 13.64 -14.27 -0.19 -9.14 16 17 C 0.04 0.47 3.25 -27.81 -0.09 0.38 16 18 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 19 C 0.04 0.32 6.29 37.23 0.23 0.56 16 20 O -0.37 -3.45 10.85 -48.76 -0.53 -3.98 16 21 C 0.02 0.14 7.05 37.23 0.26 0.40 16 22 C 0.02 0.18 7.05 37.23 0.26 0.44 16 23 O -0.35 -4.14 10.03 -62.49 -0.63 -4.76 16 24 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 28 H 0.17 2.71 8.06 -52.49 -0.42 2.28 16 29 H 0.16 3.08 5.92 -52.49 -0.31 2.77 16 30 H 0.41 4.75 8.74 -40.82 -0.36 4.39 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -33.87 313.04 -6.94 -40.81 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.43 Total: 2.83 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.69 Total: 1.04 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.84 Total: -47.70 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.35 Total: -17.89 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.87 -6.94 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.763 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds