Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46783 * 299.99935 * 3 2 1 6 6 H 1.48502 * 109.46723 * 59.99691 * 3 2 1 7 7 C 1.37878 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47249 * 179.97438 * 9 7 2 11 11 C 1.34974 * 125.97347 * 125.00227 * 10 9 7 12 12 C 1.35245 * 107.85756 * 179.97438 * 11 10 9 13 13 C 1.40405 * 107.86800 * 0.02562 * 12 11 10 14 14 N 1.40158 * 125.97232 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99778 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99911 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.52024 * 55.00337 * 17 15 14 19 19 C 1.53146 * 109.52584 * 294.87247 * 17 15 14 20 20 O 1.43074 * 109.15049 * 184.78468 * 19 17 15 21 21 C 1.43078 * 113.59178 * 57.95226 * 20 19 17 22 22 C 1.53146 * 109.15192 * 302.04694 * 21 20 19 23 23 O 1.43068 * 109.52297 * 175.13377 * 17 15 14 24 24 N 1.31218 * 108.05569 * 359.97438 * 13 12 11 25 25 H 0.96998 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46695 * 60.00179 * 9 7 2 27 27 H 1.09001 * 109.47351 * 300.00227 * 9 7 2 28 28 H 1.07998 * 126.07144 * 0.24593 * 11 10 9 29 29 H 1.08001 * 126.06103 * 179.97438 * 12 11 10 30 30 H 0.96995 * 120.00284 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.52129 * 304.68771 * 19 17 15 32 32 H 1.08997 * 109.52094 * 64.81388 * 19 17 15 33 33 H 1.09001 * 109.52306 * 61.94979 * 21 20 19 34 34 H 1.08996 * 109.52469 * 182.07921 * 21 20 19 35 35 H 1.09002 * 109.52386 * 175.21464 * 22 21 20 36 36 H 1.09002 * 109.52070 * 295.34486 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.2420 -4.6224 0.8953 12 6 3.2603 -5.4430 0.5505 13 6 3.8686 -4.9149 -0.5995 14 7 4.9639 -5.4661 -1.2784 15 6 5.5279 -6.6066 -0.8336 16 8 5.0874 -7.1561 0.1539 17 6 6.7053 -7.1996 -1.5639 18 1 7.4954 -6.4536 -1.6475 19 6 6.2692 -7.6423 -2.9637 20 8 7.3617 -8.3042 -3.6082 21 6 7.8489 -9.4399 -2.8872 22 6 8.2849 -8.9972 -1.4875 23 8 7.1934 -8.3344 -0.8422 24 7 3.2318 -3.8157 -0.9281 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8898 27 1 0.6240 -2.5567 0.8903 28 1 1.5754 -4.7543 1.7347 29 1 3.5539 -6.3441 1.0684 30 1 5.3164 -5.0265 -2.0679 31 1 5.4250 -8.3271 -2.8826 32 1 5.9756 -6.7695 -3.5467 33 1 7.0578 -10.1851 -2.8037 34 1 8.6997 -9.8696 -3.4160 35 1 8.5774 -9.8702 -0.9039 36 1 9.1299 -8.3134 -1.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -56.860856 kcal Electronic energy + Delta-G solvation = -21452.517745 eV Core-core repulsion = 17938.437337 eV Total energy + Delta-G solvation = -3514.080408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33507 -41.39995 -39.97344 -37.15172 -36.26801 -35.33278 -33.34414 -32.32327 -30.98735 -29.43376 -28.44388 -26.28246 -24.99535 -23.49772 -22.49652 -21.81661 -21.02895 -18.79538 -18.69395 -18.30218 -17.79277 -17.60571 -17.05644 -16.79883 -16.52924 -16.26618 -16.10691 -15.73830 -15.32853 -14.67171 -14.51580 -14.25647 -14.16169 -13.85645 -13.67294 -13.30209 -12.93131 -12.73297 -12.65092 -12.31522 -12.09579 -11.93690 -11.71252 -11.55388 -11.40472 -10.87794 -10.72428 -10.30160 -9.80011 -9.17586 -8.33568 -6.47406 0.83474 1.12068 1.34905 1.37860 1.40286 1.52654 2.09389 2.13727 2.35995 2.61281 2.83758 2.98742 3.33639 3.46028 3.81103 3.95272 3.95769 4.14065 4.23939 4.24571 4.48051 4.53409 4.69938 4.79742 4.82008 4.87117 4.91034 5.01367 5.09674 5.56661 5.77176 5.82592 5.85867 5.87009 6.18659 6.26570 6.64283 6.89227 7.03593 7.22795 8.74538 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033827 B = 0.003196 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.546696 B = 8757.530561 C = 9130.839915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.059 3.941 12 C -0.296 4.296 13 C 0.265 3.735 14 N -0.616 5.616 15 C 0.529 3.471 16 O -0.530 6.530 17 C 0.054 3.946 18 H 0.124 0.876 19 C 0.039 3.961 20 O -0.381 6.381 21 C 0.016 3.984 22 C 0.019 3.981 23 O -0.381 6.381 24 N -0.339 5.339 25 H 0.273 0.727 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.165 0.835 30 H 0.428 0.572 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.538 -16.780 -5.380 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.090 4.090 12 C -0.327 4.327 13 C 0.010 3.990 14 N -0.268 5.268 15 C 0.315 3.685 16 O -0.403 6.403 17 C -0.008 4.008 18 H 0.142 0.858 19 C -0.038 4.038 20 O -0.300 6.300 21 C -0.061 4.061 22 C -0.057 4.057 23 O -0.300 6.300 24 N -0.170 5.170 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.182 0.818 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.934 -16.039 -5.499 22.595 hybrid contribution 0.160 0.489 0.352 0.623 sum 15.094 -15.551 -5.146 22.274 Atomic orbital electron populations 1.69996 1.07228 1.28731 1.50014 1.25739 0.95833 1.02742 0.93883 0.85290 0.78433 0.78357 0.78276 1.19840 1.19821 1.19615 1.21431 0.93416 0.90928 1.52745 0.92872 1.19371 0.85657 0.81452 0.98234 1.48867 1.23784 1.20266 1.19487 1.23169 1.00377 0.88762 0.96698 1.21704 1.02330 1.06641 1.01992 1.19360 0.91637 0.93385 0.94585 1.42358 1.28832 1.24826 1.30737 1.20593 0.84037 0.79312 0.84597 1.90655 1.62451 1.60590 1.26614 1.22454 0.94984 0.91241 0.92085 0.85825 1.23192 0.89745 0.99870 0.91018 1.88129 1.50359 1.44369 1.47112 1.23540 1.01465 0.88004 0.93058 1.23637 0.88435 0.99072 0.94530 1.88188 1.52121 1.42633 1.47089 1.77257 1.04637 1.17805 1.17317 0.91828 0.95883 0.92299 0.78116 0.81790 0.73382 0.91922 0.84850 0.91909 0.84610 0.85240 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.87 13.29 21.45 0.28 -51.59 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -30.63 9.24 25.60 0.24 -30.39 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 13.96 6.26 85.63 0.54 14.50 16 10 N -0.34 -15.91 3.67 -351.84 -1.29 -17.21 16 11 C 0.06 2.30 11.44 83.52 0.96 3.25 16 12 C -0.30 -11.57 9.60 22.11 0.21 -11.36 16 13 C 0.26 10.36 8.11 133.32 1.08 11.44 16 14 N -0.62 -17.73 5.41 -307.51 -1.67 -19.39 16 15 C 0.53 14.79 7.15 87.66 0.63 15.41 16 16 O -0.53 -19.16 13.64 15.88 0.22 -18.94 16 17 C 0.05 1.06 3.25 29.90 0.10 1.15 16 18 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.04 0.64 6.29 72.03 0.45 1.09 16 20 O -0.38 -6.14 10.85 -136.05 -1.48 -7.62 16 21 C 0.02 0.18 7.05 72.03 0.51 0.69 16 22 C 0.02 0.24 7.05 72.03 0.51 0.75 16 23 O -0.38 -8.45 10.03 -122.92 -1.23 -9.69 16 24 N -0.34 -15.47 12.42 -54.45 -0.68 -16.15 16 25 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 28 H 0.20 6.22 8.06 -2.91 -0.02 6.20 16 29 H 0.16 6.30 5.92 -2.91 -0.02 6.28 16 30 H 0.43 9.28 8.74 -92.71 -0.81 8.46 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.20 313.04 2.16 -71.04 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.30 Total: 16.23 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.68 Total: 8.01 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -3.35 Total: -104.33 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -2.49 Total: -36.24 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.20 2.16 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.177 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds