Wall clock time and date at job start Tue Mar 31 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34971 * 125.97526 * 125.00091 * 10 9 7 12 12 C 1.35239 * 107.86197 * 180.02562 * 11 10 9 13 13 C 1.40403 * 107.86632 * 359.97438 * 12 11 10 14 14 N 1.40163 * 125.97577 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99501 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99703 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.52412 * 304.86483 * 17 15 14 19 19 C 1.53143 * 109.52601 * 64.99711 * 17 15 14 20 20 O 1.43079 * 109.14728 * 175.21436 * 19 17 15 21 21 C 1.43078 * 113.59354 * 302.04672 * 20 19 17 22 22 C 1.53141 * 109.14871 * 57.95414 * 21 20 19 23 23 O 1.43067 * 109.15309 * 304.68867 * 22 21 20 24 24 N 1.31223 * 108.05492 * 359.72226 * 13 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.07999 * 126.07318 * 359.97438 * 11 10 9 29 29 H 1.07997 * 126.06996 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00185 * 180.02562 * 14 13 12 31 31 H 1.08998 * 109.52371 * 295.11445 * 19 17 15 32 32 H 1.08997 * 109.52151 * 55.31841 * 19 17 15 33 33 H 1.08997 * 109.52212 * 177.85619 * 21 20 19 34 34 H 1.08996 * 109.52669 * 298.05306 * 21 20 19 35 35 H 1.08998 * 109.52205 * 64.59036 * 22 21 20 36 36 H 1.09002 * 109.52411 * 184.71400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2420 -4.6225 0.8942 12 6 3.2609 -5.4424 0.5501 13 6 3.8690 -4.9147 -0.6001 14 7 4.9648 -5.4655 -1.2786 15 6 5.5297 -6.6051 -0.8330 16 8 5.0901 -7.1538 0.1554 17 6 6.7083 -7.1971 -1.5622 18 1 6.4495 -7.3490 -2.6101 19 6 7.9028 -6.2440 -1.4629 20 8 9.0469 -6.8618 -2.0600 21 6 9.3962 -8.1156 -1.4658 22 6 8.2015 -9.0686 -1.5651 23 8 7.0575 -8.4509 -0.9681 24 7 3.2279 -3.8190 -0.9327 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.5780 -4.7522 1.7360 29 1 3.5548 -6.3434 1.0681 30 1 5.3170 -5.0260 -2.0684 31 1 7.6737 -5.3168 -1.9882 32 1 8.1107 -6.0284 -0.4149 33 1 10.2486 -8.5438 -1.9933 34 1 9.6542 -7.9629 -0.4179 35 1 7.9937 -9.2843 -2.6131 36 1 8.4311 -9.9963 -1.0409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172091732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:07 Heat of formation + Delta-G solvation = -32.996671 kcal Electronic energy + Delta-G solvation = -21470.357070 eV Core-core repulsion = 17957.311490 eV Total energy + Delta-G solvation = -3513.045580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99250 -40.29061 -38.85822 -36.38500 -34.82934 -33.44610 -32.23389 -30.86162 -29.38244 -28.57051 -26.69733 -25.41341 -23.30120 -22.38705 -21.40593 -20.32485 -19.65564 -17.69634 -17.31894 -16.82260 -16.58937 -16.52206 -16.17138 -15.77994 -15.28672 -14.97004 -14.74346 -14.26820 -13.87945 -13.68078 -13.46472 -12.81054 -12.68463 -12.38067 -12.26003 -12.02651 -11.77779 -11.22327 -11.09507 -10.96202 -10.86650 -10.50587 -10.27650 -10.04872 -9.71502 -9.55547 -9.49475 -8.64942 -8.19192 -7.53395 -6.26290 -4.31645 2.15806 2.34519 2.85725 3.24430 3.26345 3.27868 3.31572 3.41096 3.62564 3.86949 4.12245 4.29928 4.45135 4.49577 4.58077 4.70304 4.80489 5.04082 5.08915 5.18653 5.32556 5.36814 5.49585 5.74054 6.17299 6.40577 6.45731 6.49692 6.62671 6.82573 7.02450 7.30385 7.50436 7.68131 7.85730 8.00291 8.11658 8.57419 8.77034 9.34070 10.82481 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029941 B = 0.003350 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.952545 B = 8356.888785 C = 9091.248793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.287 4.287 13 C 0.256 3.744 14 N -0.627 5.627 15 C 0.526 3.474 16 O -0.490 6.490 17 C 0.045 3.955 18 H 0.099 0.901 19 C 0.035 3.965 20 O -0.372 6.372 21 C 0.019 3.981 22 C 0.024 3.976 23 O -0.349 6.349 24 N -0.301 5.301 25 H 0.268 0.732 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.143 -15.288 -3.690 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.319 4.319 13 C 0.003 3.997 14 N -0.276 5.276 15 C 0.310 3.690 16 O -0.361 6.361 17 C -0.017 4.017 18 H 0.117 0.883 19 C -0.042 4.042 20 O -0.291 6.291 21 C -0.058 4.058 22 C -0.053 4.053 23 O -0.267 6.267 24 N -0.133 5.133 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.247 0.753 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.502 -14.525 -3.786 20.871 hybrid contribution 0.566 0.481 0.135 0.755 sum 15.067 -14.044 -3.650 20.918 Atomic orbital electron populations 1.69909 1.06056 1.27785 1.49583 1.24947 0.94988 0.99558 0.94544 0.86375 0.79381 0.81742 0.78940 1.21030 1.20022 1.19910 1.21213 0.93963 0.89374 1.52323 0.91333 1.19763 0.85589 0.81221 0.99343 1.49107 1.23300 1.19643 1.17851 1.22576 1.00237 0.90080 0.96809 1.21524 1.02076 1.06445 1.01814 1.19028 0.91347 0.94575 0.94721 1.42274 1.30070 1.24686 1.30567 1.19808 0.83864 0.80230 0.85108 1.90683 1.61567 1.59311 1.24580 1.22469 0.93925 0.87251 0.98091 0.88342 1.23200 0.84821 0.95625 1.00598 1.88134 1.46333 1.35052 1.59538 1.23337 0.97832 0.84861 0.99723 1.23358 0.85712 0.96676 0.99571 1.88232 1.46956 1.32684 1.58812 1.77336 1.03700 1.16277 1.15945 0.92231 0.92468 0.93657 0.81358 0.82289 0.75310 0.86726 0.90962 0.87378 0.91670 0.91731 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.61 9.24 -34.44 -0.32 -14.93 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.26 6.49 6.26 -5.20 -0.03 6.46 16 10 N -0.32 -7.28 3.66 -62.56 -0.23 -7.51 16 11 C 0.05 1.05 11.43 -17.24 -0.20 0.85 16 12 C -0.29 -5.66 9.61 -39.84 -0.38 -6.05 16 13 C 0.26 5.04 8.11 -154.38 -1.25 3.79 16 14 N -0.63 -9.30 5.41 -11.13 -0.06 -9.36 16 15 C 0.53 7.62 7.15 -10.98 -0.08 7.54 16 16 O -0.49 -8.95 13.64 -14.27 -0.19 -9.14 16 17 C 0.04 0.48 3.25 -27.81 -0.09 0.39 16 18 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 19 C 0.04 0.33 6.29 37.23 0.23 0.56 16 20 O -0.37 -3.51 10.85 -48.80 -0.53 -4.04 16 21 C 0.02 0.14 7.05 37.23 0.26 0.40 16 22 C 0.02 0.18 7.05 37.23 0.26 0.44 16 23 O -0.35 -4.13 10.03 -62.51 -0.63 -4.76 16 24 N -0.30 -6.80 12.43 31.44 0.39 -6.41 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.06 1.41 8.07 -51.92 -0.42 0.99 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 29 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 30 H 0.41 4.75 8.73 -40.82 -0.36 4.39 16 31 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -33.79 313.01 -6.94 -40.72 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.43 Total: 3.01 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.69 Total: 1.06 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.84 Total: -47.71 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.35 Total: -17.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.79 -6.94 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.727 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds