Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34971 * 125.97526 * 125.00091 * 10 9 7 12 12 C 1.35239 * 107.86197 * 180.02562 * 11 10 9 13 13 C 1.40403 * 107.86632 * 359.97438 * 12 11 10 14 14 N 1.40163 * 125.97577 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99501 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99703 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.52412 * 304.86483 * 17 15 14 19 19 C 1.53143 * 109.52601 * 64.99711 * 17 15 14 20 20 O 1.43079 * 109.14728 * 175.21436 * 19 17 15 21 21 C 1.43078 * 113.59354 * 302.04672 * 20 19 17 22 22 C 1.53141 * 109.14871 * 57.95414 * 21 20 19 23 23 O 1.43067 * 109.15309 * 304.68867 * 22 21 20 24 24 N 1.31223 * 108.05492 * 359.72226 * 13 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.07999 * 126.07318 * 359.97438 * 11 10 9 29 29 H 1.07997 * 126.06996 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00185 * 180.02562 * 14 13 12 31 31 H 1.08998 * 109.52371 * 295.11445 * 19 17 15 32 32 H 1.08997 * 109.52151 * 55.31841 * 19 17 15 33 33 H 1.08997 * 109.52212 * 177.85619 * 21 20 19 34 34 H 1.08996 * 109.52669 * 298.05306 * 21 20 19 35 35 H 1.08998 * 109.52205 * 64.59036 * 22 21 20 36 36 H 1.09002 * 109.52411 * 184.71400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2420 -4.6225 0.8942 12 6 3.2609 -5.4424 0.5501 13 6 3.8690 -4.9147 -0.6001 14 7 4.9648 -5.4655 -1.2786 15 6 5.5297 -6.6051 -0.8330 16 8 5.0901 -7.1538 0.1554 17 6 6.7083 -7.1971 -1.5622 18 1 6.4495 -7.3490 -2.6101 19 6 7.9028 -6.2440 -1.4629 20 8 9.0469 -6.8618 -2.0600 21 6 9.3962 -8.1156 -1.4658 22 6 8.2015 -9.0686 -1.5651 23 8 7.0575 -8.4509 -0.9681 24 7 3.2279 -3.8190 -0.9327 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.5780 -4.7522 1.7360 29 1 3.5548 -6.3434 1.0681 30 1 5.3170 -5.0260 -2.0684 31 1 7.6737 -5.3168 -1.9882 32 1 8.1107 -6.0284 -0.4149 33 1 10.2486 -8.5438 -1.9933 34 1 9.6542 -7.9629 -0.4179 35 1 7.9937 -9.2843 -2.6131 36 1 8.4311 -9.9963 -1.0409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = -56.725165 kcal Electronic energy + Delta-G solvation = -21471.386015 eV Core-core repulsion = 17957.311490 eV Total energy + Delta-G solvation = -3514.074524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33548 -41.40158 -39.97490 -37.15202 -36.26681 -35.32980 -33.34461 -32.32347 -30.98729 -29.43338 -28.44213 -26.28306 -24.99221 -23.49796 -22.49775 -21.81652 -21.02758 -18.79160 -18.69139 -18.30296 -17.80338 -17.58679 -17.04363 -16.83317 -16.53906 -16.25735 -16.02691 -15.84338 -15.28926 -14.68301 -14.50727 -14.23074 -14.15676 -13.85725 -13.71070 -13.26995 -12.94459 -12.72563 -12.64802 -12.28865 -12.12127 -11.93221 -11.70533 -11.57145 -11.41674 -10.87734 -10.71750 -10.30134 -9.80039 -9.17579 -8.33054 -6.47162 0.83330 1.12483 1.34608 1.40086 1.41486 1.50375 2.09273 2.13600 2.36357 2.61104 2.83719 2.99224 3.33594 3.45923 3.80953 3.95264 3.95684 4.13911 4.23922 4.24467 4.47929 4.53211 4.69914 4.79686 4.81871 4.87090 4.91002 5.01321 5.09695 5.56452 5.77353 5.82691 5.85861 5.86753 6.18671 6.26604 6.63944 6.89246 7.03581 7.22878 8.74657 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029941 B = 0.003350 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.952545 B = 8356.888785 C = 9091.248793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.272 3.728 10 N -0.342 5.342 11 C 0.059 3.941 12 C -0.296 4.296 13 C 0.265 3.735 14 N -0.616 5.616 15 C 0.529 3.471 16 O -0.530 6.530 17 C 0.055 3.945 18 H 0.126 0.874 19 C 0.038 3.962 20 O -0.381 6.381 21 C 0.015 3.985 22 C 0.020 3.980 23 O -0.381 6.381 24 N -0.339 5.339 25 H 0.273 0.727 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.202 0.798 29 H 0.165 0.835 30 H 0.428 0.572 31 H 0.133 0.867 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.861 -15.689 -4.209 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.072 0.928 9 C 0.154 3.846 10 N -0.124 5.124 11 C -0.090 4.090 12 C -0.327 4.327 13 C 0.010 3.990 14 N -0.268 5.268 15 C 0.315 3.685 16 O -0.403 6.403 17 C -0.007 4.007 18 H 0.144 0.856 19 C -0.039 4.039 20 O -0.300 6.300 21 C -0.061 4.061 22 C -0.056 4.056 23 O -0.300 6.300 24 N -0.170 5.170 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.219 0.781 29 H 0.182 0.818 30 H 0.266 0.734 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.251 -14.946 -4.328 22.499 hybrid contribution 0.108 0.437 0.302 0.542 sum 16.359 -14.509 -4.026 22.233 Atomic orbital electron populations 1.69990 1.07258 1.28865 1.49859 1.25745 0.95831 1.02747 0.93845 0.85400 0.78283 0.77792 0.78973 1.19903 1.19466 1.19701 1.21382 0.93458 0.90919 1.52974 0.92773 1.19358 0.85653 0.81440 0.98192 1.48867 1.23984 1.20229 1.19322 1.23165 1.00367 0.88726 0.96754 1.21701 1.02242 1.06630 1.02081 1.19362 0.91604 0.93474 0.94515 1.42360 1.28749 1.24847 1.30795 1.20593 0.84148 0.79284 0.84518 1.90655 1.62915 1.60286 1.26453 1.22451 0.92526 0.87351 0.98354 0.85619 1.23196 0.84386 0.95949 1.00387 1.88131 1.45978 1.36050 1.59801 1.23546 0.98564 0.84016 1.00006 1.23633 0.84406 0.97109 1.00484 1.88184 1.48756 1.33037 1.60047 1.77259 1.04720 1.18021 1.17027 0.91821 0.92336 0.95951 0.78132 0.81789 0.73377 0.84911 0.92086 0.84597 0.92003 0.90345 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.55 -30.70 9.24 25.60 0.24 -30.46 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.27 14.01 6.26 85.63 0.54 14.54 16 10 N -0.34 -15.91 3.66 -351.84 -1.29 -17.20 16 11 C 0.06 2.30 11.43 83.52 0.96 3.25 16 12 C -0.30 -11.56 9.61 22.11 0.21 -11.35 16 13 C 0.26 10.36 8.11 133.32 1.08 11.44 16 14 N -0.62 -17.70 5.41 -307.50 -1.66 -19.36 16 15 C 0.53 14.76 7.15 87.66 0.63 15.39 16 16 O -0.53 -19.14 13.64 15.88 0.22 -18.92 16 17 C 0.05 1.07 3.25 29.90 0.10 1.17 16 18 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 19 C 0.04 0.64 6.29 72.03 0.45 1.10 16 20 O -0.38 -6.26 10.85 -136.00 -1.48 -7.74 16 21 C 0.01 0.17 7.05 72.03 0.51 0.68 16 22 C 0.02 0.25 7.05 72.03 0.51 0.75 16 23 O -0.38 -8.41 10.03 -122.90 -1.23 -9.65 16 24 N -0.34 -15.46 12.43 -54.45 -0.68 -16.14 16 25 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.06 2.94 8.07 -2.38 -0.02 2.93 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.20 6.23 8.06 -2.91 -0.02 6.20 16 29 H 0.16 6.30 5.91 -2.91 -0.02 6.28 16 30 H 0.43 9.25 8.73 -92.71 -0.81 8.44 16 31 H 0.13 1.67 8.05 -2.39 -0.02 1.65 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -73.04 313.01 2.17 -70.87 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.30 Total: 16.64 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.68 Total: 8.00 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.35 Total: -104.37 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -2.49 Total: -36.31 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.04 2.17 -70.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.149 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds