Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20415 * 2 1 4 4 C 1.38425 * 114.92174 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20296 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46797 * 90.00752 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47033 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99490 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00088 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00182 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46655 * 325.00238 * 12 11 9 14 14 C 1.53004 * 109.46721 * 85.00111 * 12 11 9 15 15 C 1.50696 * 109.47080 * 204.99758 * 12 11 9 16 16 H 1.07997 * 120.00132 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99919 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99885 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00225 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47218 * 119.99876 * 19 17 15 22 22 H 1.48493 * 109.47398 * 240.00426 * 19 17 15 23 23 S 1.75887 * 125.19945 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46776 * 89.99460 * 1 2 3 25 25 H 1.08999 * 109.46856 * 209.99477 * 1 2 3 26 26 H 1.09002 * 109.46917 * 329.99965 * 1 2 3 27 27 H 1.08001 * 122.54283 * 0.02562 * 3 2 1 28 28 H 1.07997 * 122.54292 * 179.73691 * 4 3 2 29 29 H 1.08998 * 109.47062 * 210.00206 * 6 5 4 30 30 H 1.08994 * 109.47215 * 330.00270 * 6 5 4 31 31 H 1.08998 * 109.46869 * 299.99573 * 7 6 5 32 32 H 1.09002 * 109.47526 * 60.00122 * 7 6 5 33 33 H 1.08998 * 109.47021 * 299.99480 * 8 7 6 34 34 H 1.08999 * 109.47637 * 59.99536 * 8 7 6 35 35 H 0.97002 * 119.99925 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.46634 * 180.02562 * 14 12 11 37 37 H 1.09006 * 109.46928 * 299.99870 * 14 12 11 38 38 H 1.08991 * 109.47618 * 60.00173 * 14 12 11 39 39 H 0.97000 * 119.99903 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3861 -0.9771 -0.0016 7 6 5.8647 -1.1560 1.4406 8 6 7.2974 -1.6928 1.4396 9 6 7.7692 -1.8684 2.8601 10 8 7.0321 -1.5910 3.7824 11 7 9.0100 -2.3337 3.1055 12 6 9.4688 -2.5039 4.4863 13 1 9.0468 -1.7151 5.1091 14 6 9.0126 -3.8669 5.0109 15 6 10.9732 -2.4271 4.5289 16 1 11.5317 -2.2671 3.6185 17 6 11.6365 -2.5601 5.7303 18 7 10.9563 -2.7544 6.8390 19 14 13.5012 -2.4641 5.7833 20 1 14.0245 -2.2407 4.4115 21 1 13.9144 -1.3386 6.6596 22 1 14.0473 -3.7362 6.3207 23 16 2.5209 -1.4373 -0.0006 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8670 2.0895 0.0004 28 1 4.3721 1.6349 -0.0048 29 1 5.4132 -1.9382 -0.5152 30 1 6.0384 -0.2717 -0.5161 31 1 5.8376 -0.1950 1.9542 32 1 5.2124 -1.8616 1.9552 33 1 7.3250 -2.6538 0.9258 34 1 7.9496 -0.9870 0.9251 35 1 9.5993 -2.5559 2.3677 36 1 9.3536 -3.9933 6.0384 37 1 7.9244 -3.9225 4.9800 38 1 9.4345 -4.6557 4.3881 39 1 11.4229 -2.8476 7.6843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176039094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -54.612665 kcal Electronic energy + Delta-G solvation = -18707.507596 eV Core-core repulsion = 15739.817891 eV Total energy + Delta-G solvation = -2967.689705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57828 -39.02327 -36.84799 -35.78679 -34.30236 -32.79970 -31.09463 -29.36670 -27.35322 -26.07905 -24.09871 -23.18982 -22.14462 -21.03958 -19.73451 -18.86268 -17.83874 -17.32830 -17.12550 -16.60338 -16.21619 -15.82475 -15.11631 -14.92762 -14.75812 -14.42821 -14.15873 -13.91791 -13.77186 -13.49032 -13.38189 -13.00192 -12.89477 -12.78107 -12.72213 -12.39941 -12.31544 -12.27428 -12.19771 -12.10113 -11.70922 -11.49316 -11.09579 -10.70797 -10.55802 -9.71724 -9.38680 -9.30754 -8.17954 -6.35699 0.08332 0.71088 1.10055 1.44268 1.44965 1.57384 1.84296 1.89238 2.36566 2.70711 3.12388 3.77244 3.96615 4.01333 4.07613 4.29330 4.42922 4.47839 4.63584 4.71368 4.72622 4.74118 4.81229 4.82305 4.89391 4.92619 5.09317 5.11036 5.15133 5.33109 5.38732 5.41889 5.44513 5.62777 5.67661 5.70160 5.92125 6.10359 6.73501 7.01901 7.32858 7.62725 8.88700 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.002576 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.388336 B =10867.397648 C =11017.739660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.190 4.190 3 C -0.151 4.151 4 C -0.148 4.148 5 C -0.182 4.182 6 C -0.041 4.041 7 C -0.090 4.090 8 C -0.126 4.126 9 C 0.491 3.509 10 O -0.608 6.608 11 N -0.708 5.708 12 C 0.268 3.732 13 H -0.006 1.006 14 C -0.133 4.133 15 C -0.544 4.544 16 H 0.075 0.925 17 C 0.010 3.990 18 N -0.920 5.920 19 Si 0.975 3.025 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.279 1.279 23 S 0.068 5.932 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.407 0.593 36 H 0.065 0.935 37 H 0.009 0.991 38 H 0.041 0.959 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 4.338 -19.148 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.307 4.307 3 C -0.181 4.181 4 C -0.177 4.177 5 C -0.300 4.300 6 C -0.080 4.080 7 C -0.129 4.129 8 C -0.166 4.166 9 C 0.279 3.721 10 O -0.491 6.491 11 N -0.357 5.357 12 C 0.164 3.836 13 H 0.012 0.988 14 C -0.192 4.192 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.189 4.189 18 N -0.558 5.558 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.210 1.210 22 H -0.204 1.204 23 S 0.332 5.668 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.542 2.947 -18.312 24.199 hybrid contribution 1.322 1.384 0.577 1.999 sum -14.221 4.331 -17.734 23.141 Atomic orbital electron populations 1.20423 0.86149 1.03834 1.03628 1.24857 1.01178 0.95152 1.09559 1.20334 0.92897 1.00098 1.04738 1.20374 0.96960 0.96275 1.04136 1.24662 0.99033 0.96610 1.09652 1.20182 0.88997 1.02704 0.96122 1.21218 0.94447 1.00996 0.96236 1.21695 0.97986 1.05551 0.91346 1.21637 0.81480 0.76023 0.92993 1.90634 1.56100 1.53467 1.48862 1.46319 1.14782 1.64654 1.09974 1.18319 0.93606 0.92798 0.78889 0.98801 1.21895 0.96089 0.98502 1.02740 1.21593 0.91069 1.50800 0.94787 0.90673 1.25864 1.03892 0.94204 0.94982 1.70076 1.37430 1.49180 0.99139 0.85254 0.78630 0.77521 0.78659 1.18165 1.21042 1.20445 1.84301 0.97641 1.10779 1.74080 0.89557 0.91154 0.89377 0.82748 0.83231 0.89314 0.87740 0.93006 0.93522 0.86288 0.86125 0.75815 0.91641 0.97146 0.93946 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.38 71.24 0.74 -0.30 16 2 C -0.19 -3.60 6.51 24.59 0.16 -3.44 16 3 C -0.15 -2.86 10.05 21.22 0.21 -2.64 16 4 C -0.15 -3.01 10.05 21.22 0.21 -2.80 16 5 C -0.18 -3.91 5.76 24.59 0.14 -3.77 16 6 C -0.04 -0.76 5.71 29.85 0.17 -0.59 16 7 C -0.09 -2.32 4.49 30.60 0.14 -2.18 16 8 C -0.13 -3.12 5.70 29.85 0.17 -2.95 16 9 C 0.49 19.36 7.79 87.66 0.68 20.05 16 10 O -0.61 -30.53 15.64 -3.02 -0.05 -30.58 16 11 N -0.71 -29.27 5.07 -446.10 -2.26 -31.53 16 12 C 0.27 14.14 2.56 44.25 0.11 14.25 16 13 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 14 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 15 C -0.54 -28.99 8.73 25.60 0.22 -28.77 16 16 H 0.08 3.71 7.74 -2.91 -0.02 3.68 16 17 C 0.01 0.56 5.30 84.65 0.45 1.01 16 18 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 19 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 S 0.07 1.44 23.31 -56.49 -1.32 0.13 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 32 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.41 13.70 8.54 -92.71 -0.79 12.91 16 36 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.17 342.32 2.97 -68.20 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.24 Total: 21.32 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.08 Total: -18.41 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -2.02 Total: -84.83 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.13 kcal Total: -71.17 2.97 -68.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176039094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.587 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds