Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20415 * 2 1 4 4 C 1.38425 * 114.92174 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20296 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46797 * 90.00752 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47033 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99490 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00088 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00182 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46548 * 35.00371 * 12 11 9 14 14 C 1.52995 * 109.46818 * 275.00105 * 12 11 9 15 15 C 1.50706 * 109.47061 * 154.99785 * 12 11 9 16 16 H 1.07995 * 119.99906 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99536 * 179.97438 * 15 12 11 18 18 N 1.31506 * 120.00168 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99543 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46915 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46665 * 120.00001 * 19 17 15 22 22 H 1.48501 * 109.46803 * 240.00024 * 19 17 15 23 23 S 1.75887 * 125.19945 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46776 * 89.99460 * 1 2 3 25 25 H 1.08999 * 109.46856 * 209.99477 * 1 2 3 26 26 H 1.09002 * 109.46917 * 329.99965 * 1 2 3 27 27 H 1.08001 * 122.54283 * 0.02562 * 3 2 1 28 28 H 1.07997 * 122.54292 * 179.73691 * 4 3 2 29 29 H 1.08998 * 109.47062 * 210.00206 * 6 5 4 30 30 H 1.08994 * 109.47215 * 330.00270 * 6 5 4 31 31 H 1.08998 * 109.46869 * 299.99573 * 7 6 5 32 32 H 1.09002 * 109.47526 * 60.00122 * 7 6 5 33 33 H 1.08998 * 109.47021 * 299.99480 * 8 7 6 34 34 H 1.08999 * 109.47637 * 59.99536 * 8 7 6 35 35 H 0.97002 * 119.99925 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.47411 * 60.00051 * 14 12 11 37 37 H 1.09007 * 109.46525 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47348 * 299.99304 * 14 12 11 39 39 H 0.97003 * 119.99844 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3861 -0.9771 -0.0016 7 6 5.8647 -1.1560 1.4406 8 6 7.2974 -1.6928 1.4396 9 6 7.7692 -1.8684 2.8601 10 8 7.0321 -1.5910 3.7824 11 7 9.0100 -2.3337 3.1055 12 6 9.4688 -2.5039 4.4863 13 1 8.6326 -2.8189 5.1107 14 6 10.0223 -1.1760 5.0070 15 6 10.5513 -3.5515 4.5305 16 1 10.8657 -4.0417 3.6211 17 6 11.1401 -3.8839 5.7321 18 7 10.7568 -3.2872 6.8396 19 14 12.4825 -5.1819 5.7868 20 1 12.7288 -5.6972 4.4161 21 1 13.7308 -4.5807 6.3209 22 1 12.0551 -6.2991 6.6668 23 16 2.5209 -1.4373 -0.0006 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8670 2.0895 0.0004 28 1 4.3721 1.6349 -0.0048 29 1 5.4132 -1.9382 -0.5152 30 1 6.0384 -0.2717 -0.5161 31 1 5.8376 -0.1950 1.9542 32 1 5.2124 -1.8616 1.9552 33 1 7.3250 -2.6538 0.9258 34 1 7.9496 -0.9870 0.9251 35 1 9.5993 -2.5559 2.3677 36 1 9.2394 -0.4184 4.9751 37 1 10.3633 -1.3026 6.0346 38 1 10.8585 -0.8611 4.3827 39 1 11.1714 -3.5209 7.6848 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176039108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -35.988173 kcal Electronic energy + Delta-G solvation = -18706.691506 eV Core-core repulsion = 15739.809420 eV Total energy + Delta-G solvation = -2966.882086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95700 -38.20466 -35.22300 -34.48975 -32.37335 -31.88273 -29.49947 -28.15117 -25.29149 -25.09007 -23.16543 -21.96497 -20.61256 -19.33522 -18.92483 -17.26695 -16.78094 -15.65372 -15.49409 -15.27959 -15.10867 -14.24623 -14.14735 -13.80082 -13.49979 -13.17006 -13.09373 -12.61398 -12.50646 -12.36572 -11.98591 -11.71292 -11.58700 -11.39703 -11.26712 -11.05074 -10.93370 -10.85177 -10.68315 -10.55586 -10.28662 -10.22895 -9.02674 -8.95479 -8.56666 -8.54220 -8.51309 -7.86435 -6.11259 -4.20431 0.87596 1.49078 1.89175 2.62847 3.23952 3.31576 3.34335 3.47183 4.12791 4.39008 4.63680 4.71948 4.98541 5.02366 5.19591 5.21885 5.23775 5.25195 5.41343 5.44886 5.57966 5.64375 5.71317 5.73168 5.94084 6.03057 6.17742 6.26229 6.41753 6.46746 6.84719 6.99006 7.17833 7.50416 7.59387 7.71784 7.94094 8.17134 8.71521 8.80758 9.19085 9.47586 10.94780 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042244 B = 0.002581 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.650571 B =10847.674619 C =10908.145088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.189 4.189 3 C -0.137 4.137 4 C -0.141 4.141 5 C -0.164 4.164 6 C -0.051 4.051 7 C -0.096 4.096 8 C -0.142 4.142 9 C 0.498 3.502 10 O -0.557 6.557 11 N -0.712 5.712 12 C 0.263 3.737 13 H 0.047 0.953 14 C -0.146 4.146 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 S 0.094 5.906 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.388 0.612 36 H 0.014 0.986 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 6.321 -16.671 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.306 4.306 3 C -0.167 4.167 4 C -0.171 4.171 5 C -0.281 4.281 6 C -0.090 4.090 7 C -0.135 4.135 8 C -0.183 4.183 9 C 0.283 3.717 10 O -0.436 6.436 11 N -0.360 5.360 12 C 0.161 3.839 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 S 0.358 5.642 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.220 0.780 36 H 0.033 0.967 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.436 4.959 -15.779 22.624 hybrid contribution 1.403 0.762 -0.221 1.612 sum -14.033 5.721 -16.001 22.038 Atomic orbital electron populations 1.20310 0.88033 1.03095 1.02500 1.24452 0.99857 0.95866 1.10456 1.20046 0.92987 0.99079 1.04625 1.20073 0.96190 0.96003 1.04841 1.24491 0.98674 0.96362 1.08602 1.20245 0.89177 1.01293 0.98307 1.21317 0.94871 1.02866 0.94431 1.21693 0.97766 1.02905 0.95894 1.20482 0.82530 0.77973 0.90688 1.90653 1.55118 1.51416 1.46436 1.46546 1.13919 1.64115 1.11380 1.18728 0.94907 0.93393 0.76892 0.93470 1.22069 0.97804 0.96754 1.03888 1.21268 1.20244 1.21400 0.94167 0.92056 1.24905 0.97044 0.96483 0.95400 1.69915 1.42080 1.41593 0.98531 0.86394 0.81355 0.81216 0.78134 1.19751 1.20882 1.20878 1.84283 0.96773 1.09554 1.73569 0.90958 0.91380 0.90661 0.84632 0.84392 0.90765 0.89906 0.90882 0.91040 0.89489 0.89494 0.77977 0.96694 0.89207 0.95527 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.38 36.01 0.37 -0.21 16 2 C -0.19 -1.90 6.51 -36.00 -0.23 -2.13 16 3 C -0.14 -1.39 10.05 -41.21 -0.41 -1.80 16 4 C -0.14 -1.52 10.05 -41.21 -0.41 -1.94 16 5 C -0.16 -1.85 5.76 -36.00 -0.21 -2.06 16 6 C -0.05 -0.53 5.71 -27.88 -0.16 -0.69 16 7 C -0.10 -1.29 4.49 -26.73 -0.12 -1.41 16 8 C -0.14 -1.94 5.70 -27.88 -0.16 -2.09 16 9 C 0.50 9.91 7.79 -10.98 -0.09 9.82 16 10 O -0.56 -13.51 15.64 5.56 0.09 -13.43 16 11 N -0.71 -14.92 5.07 -54.93 -0.28 -15.20 16 12 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 13 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.15 -3.71 9.26 37.15 0.34 -3.37 16 15 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.19 11.32 55.43 0.63 -24.57 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 S 0.09 1.03 23.31 -107.50 -2.51 -1.48 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -31.67 342.32 -9.67 -41.34 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.09 Total: 4.57 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.65 Total: -12.14 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.35 Total: -39.77 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.67 -9.67 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176039108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.349 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds