Wall clock time and date at job start Tue Mar 31 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48499 * 109.47459 * 270.00462 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00245 * 3 2 1 6 6 H 1.48501 * 109.47327 * 149.99956 * 3 2 1 7 7 C 1.38636 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 359.97438 * 7 2 1 9 9 O 1.34796 * 119.99844 * 179.97438 * 7 2 1 10 10 C 1.35797 * 116.99849 * 185.06392 * 9 7 2 11 11 C 1.38722 * 120.08790 * 354.39906 * 10 9 7 12 12 C 1.38356 * 119.98614 * 180.02562 * 11 10 9 13 13 F 1.35093 * 119.92468 * 180.02562 * 12 11 10 14 14 C 1.38536 * 120.15431 * 0.02562 * 12 11 10 15 15 C 1.38215 * 120.17556 * 359.68071 * 14 12 11 16 16 C 1.38711 * 120.01518 * 0.60162 * 15 14 12 17 17 N 1.39933 * 120.07660 * 179.69843 * 16 15 14 18 18 C 1.46492 * 119.99938 * 359.72164 * 17 16 15 19 19 C 1.53175 * 109.54541 * 85.18069 * 18 17 16 20 20 C 1.53283 * 109.06766 * 176.84890 * 19 18 17 21 21 O 1.42899 * 109.46124 * 302.44601 * 20 19 18 22 22 C 1.42907 * 114.09828 * 61.15709 * 21 20 19 23 23 C 1.53097 * 109.41304 * 298.84226 * 22 21 20 24 24 H 0.97005 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00605 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.90811 * 180.02562 * 14 12 11 27 27 H 1.08001 * 119.99302 * 180.31714 * 15 14 12 28 28 H 0.97005 * 119.99504 * 179.73009 * 17 16 15 29 29 H 1.08996 * 109.54931 * 325.00136 * 18 17 16 30 30 H 1.09000 * 109.52325 * 296.84183 * 19 18 17 31 31 H 1.09002 * 109.52379 * 57.02831 * 19 18 17 32 32 H 1.08995 * 109.46109 * 182.44664 * 20 19 18 33 33 H 1.08999 * 109.46078 * 62.45037 * 20 19 18 34 34 H 1.09002 * 109.48185 * 178.86038 * 22 21 20 35 35 H 1.09000 * 109.49052 * 58.82645 * 22 21 20 36 36 H 1.08998 * 109.52085 * 297.69945 * 23 22 21 37 37 H 1.09002 * 109.56967 * 177.54486 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2006 -0.0011 10 6 3.9734 -2.4058 -0.1084 11 6 3.2247 -3.5736 -0.0942 12 6 3.8550 -4.8004 -0.2031 13 9 3.1247 -5.9368 -0.1897 14 6 5.2333 -4.8662 -0.3260 15 6 5.9851 -3.7065 -0.3469 16 6 5.3612 -2.4730 -0.2323 17 7 6.1216 -1.2984 -0.2470 18 6 7.5789 -1.3709 -0.3774 19 6 7.9572 -1.4543 -1.8593 20 6 9.4847 -1.4501 -1.9872 21 8 10.0106 -0.2714 -1.3738 22 6 9.7268 -0.1641 0.0227 23 6 8.2109 -0.1155 0.2316 24 1 -0.4850 0.8401 0.0004 25 1 2.1502 -3.5251 0.0027 26 1 5.7212 -5.8259 -0.4111 27 1 7.0590 -3.7610 -0.4479 28 1 5.6837 -0.4362 -0.1707 29 1 7.9482 -2.2543 0.1434 30 1 7.5564 -2.3735 -2.2865 31 1 7.5454 -0.5954 -2.3893 32 1 9.7609 -1.4654 -3.0414 33 1 9.8930 -2.3309 -1.4916 34 1 10.1774 0.7471 0.4162 35 1 10.1382 -1.0279 0.5448 36 1 7.8042 0.7704 -0.2561 37 1 7.9905 -0.0776 1.2984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181541917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:09 Heat of formation + Delta-G solvation = -92.996549 kcal Electronic energy + Delta-G solvation = -22078.357315 eV Core-core repulsion = 18542.789983 eV Total energy + Delta-G solvation = -3535.567331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.13078 -39.87072 -39.04620 -36.84064 -35.27397 -32.46752 -31.73305 -31.24346 -29.52194 -27.70022 -25.36993 -24.30446 -23.69510 -21.89350 -21.24658 -20.19656 -18.16421 -17.84258 -16.70521 -16.41816 -16.10835 -15.54103 -15.37375 -14.97137 -14.89080 -14.62343 -14.11600 -14.05447 -13.80178 -13.72986 -13.09601 -13.08965 -12.56683 -12.39081 -12.20325 -11.88766 -11.63895 -11.46797 -11.36994 -11.03237 -10.80626 -10.59701 -10.47667 -10.38684 -9.81498 -9.58138 -9.39134 -8.93829 -7.89962 -6.64717 -6.46873 -4.11584 1.97353 2.07751 3.14699 3.18771 3.28923 3.62933 3.79444 4.15374 4.31129 4.56682 4.63983 4.74033 4.83268 5.00354 5.01806 5.06461 5.10797 5.28079 5.33336 5.44811 5.50227 5.54511 5.69874 5.73361 5.88709 5.95046 5.99796 6.14832 6.27751 6.43940 6.69003 6.91001 6.95736 7.01031 7.44519 7.57362 7.83859 7.97637 8.17359 8.87322 9.46111 10.60857 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.006497 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.683853 B = 4308.409109 C = 6266.129082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.106 0.894 9 O -0.216 6.216 10 C 0.127 3.873 11 C -0.226 4.226 12 C 0.087 3.913 13 F -0.154 7.154 14 C -0.189 4.189 15 C -0.145 4.145 16 C 0.152 3.848 17 N -0.743 5.743 18 C 0.158 3.842 19 C -0.174 4.174 20 C 0.063 3.937 21 O -0.385 6.385 22 C 0.066 3.934 23 C -0.165 4.165 24 H 0.280 0.720 25 H 0.145 0.855 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.404 0.596 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.365 -2.118 -0.828 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.073 3.927 11 C -0.247 4.247 12 C 0.066 3.934 13 F -0.133 7.133 14 C -0.209 4.209 15 C -0.169 4.169 16 C 0.052 3.948 17 N -0.376 5.376 18 C 0.052 3.948 19 C -0.214 4.214 20 C -0.014 4.014 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.204 4.204 24 H 0.090 0.910 25 H 0.162 0.838 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.465 -1.696 -0.908 17.570 hybrid contribution -0.534 0.520 0.150 0.761 sum 16.931 -1.176 -0.758 16.989 Atomic orbital electron populations 1.69654 1.05537 1.28494 1.47780 1.24449 0.95019 0.98713 0.95832 0.86191 0.80225 0.81603 0.78843 1.19914 1.20758 1.18525 1.20724 0.76646 0.96658 1.52065 0.87619 1.83479 1.22754 1.24693 1.81207 1.18296 0.89519 0.85880 0.99027 1.20940 1.01871 0.90198 1.11694 1.17247 0.88999 0.81296 1.05826 1.91396 1.77942 1.49465 1.94533 1.20366 0.91673 0.98437 1.10439 1.19960 0.98633 0.89662 1.08614 1.17082 0.87479 0.87302 1.02984 1.44368 1.03770 1.06092 1.83334 1.20739 0.81566 0.97943 0.94568 1.22814 0.96221 1.04001 0.98350 1.22616 0.92775 0.87490 0.98515 1.87926 1.76689 1.43227 1.22499 1.22528 0.94046 1.02089 0.82422 1.22495 0.96561 0.98933 1.02375 0.90994 0.83789 0.86305 0.86003 0.76106 0.90588 0.90193 0.90685 0.88831 0.93140 0.88663 0.92996 0.90497 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.96 55.48 0.77 -24.20 16 2 C 0.06 1.73 5.49 -17.51 -0.10 1.63 16 3 Si 0.91 20.88 28.62 -169.99 -4.86 16.01 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.56 9.94 30.88 0.31 -10.26 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 9 O -0.22 -5.36 7.83 0.00 0.00 -5.36 16 10 C 0.13 2.81 6.67 -38.93 -0.26 2.55 16 11 C -0.23 -4.97 9.14 -39.36 -0.36 -5.33 16 12 C 0.09 1.72 7.29 -39.43 -0.29 1.43 16 13 F -0.15 -3.02 17.26 2.25 0.04 -2.98 16 14 C -0.19 -3.21 10.02 -39.48 -0.40 -3.60 16 15 C -0.15 -2.35 8.89 -39.41 -0.35 -2.70 16 16 C 0.15 2.82 6.66 -83.52 -0.56 2.26 16 17 N -0.74 -12.00 5.25 -51.82 -0.27 -12.27 16 18 C 0.16 1.95 2.22 -67.75 -0.15 1.80 16 19 C -0.17 -2.00 5.68 -26.49 -0.15 -2.15 16 20 C 0.06 0.61 6.85 37.30 0.26 0.87 16 21 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 22 C 0.07 0.62 6.84 37.21 0.25 0.87 16 23 C -0.17 -1.78 5.61 -26.59 -0.15 -1.93 16 24 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.14 3.37 5.64 -52.49 -0.30 3.08 16 26 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.12 1.61 6.07 -52.49 -0.32 1.29 16 28 H 0.40 7.02 7.97 -40.82 -0.33 6.69 16 29 H 0.08 0.89 6.51 -51.93 -0.34 0.55 16 30 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -28.87 309.00 -6.46 -35.33 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.48 Total: 8.05 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.94 Total: -14.55 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.50 Total: -36.47 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.38 Total: -10.05 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.86 Total: 16.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.87 -6.46 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181541917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.666 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds