Wall clock time and date at job start Tue Mar 31 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48499 * 109.47459 * 270.00462 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00245 * 3 2 1 6 6 H 1.48501 * 109.47327 * 149.99956 * 3 2 1 7 7 C 1.38636 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 359.97438 * 7 2 1 9 9 O 1.34796 * 119.99844 * 179.97438 * 7 2 1 10 10 C 1.35797 * 116.99849 * 185.06392 * 9 7 2 11 11 C 1.38722 * 120.08790 * 354.39906 * 10 9 7 12 12 C 1.38356 * 119.98614 * 180.02562 * 11 10 9 13 13 F 1.35093 * 119.92468 * 180.02562 * 12 11 10 14 14 C 1.38536 * 120.15431 * 0.02562 * 12 11 10 15 15 C 1.38215 * 120.17556 * 359.68071 * 14 12 11 16 16 C 1.38711 * 120.01518 * 0.60162 * 15 14 12 17 17 N 1.39933 * 120.07660 * 179.69843 * 16 15 14 18 18 C 1.46492 * 119.99938 * 359.72164 * 17 16 15 19 19 C 1.53175 * 109.54541 * 85.18069 * 18 17 16 20 20 C 1.53283 * 109.06766 * 176.84890 * 19 18 17 21 21 O 1.42899 * 109.46124 * 302.44601 * 20 19 18 22 22 C 1.42907 * 114.09828 * 61.15709 * 21 20 19 23 23 C 1.53097 * 109.41304 * 298.84226 * 22 21 20 24 24 H 0.97005 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00605 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.90811 * 180.02562 * 14 12 11 27 27 H 1.08001 * 119.99302 * 180.31714 * 15 14 12 28 28 H 0.97005 * 119.99504 * 179.73009 * 17 16 15 29 29 H 1.08996 * 109.54931 * 325.00136 * 18 17 16 30 30 H 1.09000 * 109.52325 * 296.84183 * 19 18 17 31 31 H 1.09002 * 109.52379 * 57.02831 * 19 18 17 32 32 H 1.08995 * 109.46109 * 182.44664 * 20 19 18 33 33 H 1.08999 * 109.46078 * 62.45037 * 20 19 18 34 34 H 1.09002 * 109.48185 * 178.86038 * 22 21 20 35 35 H 1.09000 * 109.49052 * 58.82645 * 22 21 20 36 36 H 1.08998 * 109.52085 * 297.69945 * 23 22 21 37 37 H 1.09002 * 109.56967 * 177.54486 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2006 -0.0011 10 6 3.9734 -2.4058 -0.1084 11 6 3.2247 -3.5736 -0.0942 12 6 3.8550 -4.8004 -0.2031 13 9 3.1247 -5.9368 -0.1897 14 6 5.2333 -4.8662 -0.3260 15 6 5.9851 -3.7065 -0.3469 16 6 5.3612 -2.4730 -0.2323 17 7 6.1216 -1.2984 -0.2470 18 6 7.5789 -1.3709 -0.3774 19 6 7.9572 -1.4543 -1.8593 20 6 9.4847 -1.4501 -1.9872 21 8 10.0106 -0.2714 -1.3738 22 6 9.7268 -0.1641 0.0227 23 6 8.2109 -0.1155 0.2316 24 1 -0.4850 0.8401 0.0004 25 1 2.1502 -3.5251 0.0027 26 1 5.7212 -5.8259 -0.4111 27 1 7.0590 -3.7610 -0.4479 28 1 5.6837 -0.4362 -0.1707 29 1 7.9482 -2.2543 0.1434 30 1 7.5564 -2.3735 -2.2865 31 1 7.5454 -0.5954 -2.3893 32 1 9.7609 -1.4654 -3.0414 33 1 9.8930 -2.3309 -1.4916 34 1 10.1774 0.7471 0.4162 35 1 10.1382 -1.0279 0.5448 36 1 7.8042 0.7704 -0.2561 37 1 7.9905 -0.0776 1.2984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181541917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:09 Heat of formation + Delta-G solvation = -111.615126 kcal Electronic energy + Delta-G solvation = -22079.164677 eV Core-core repulsion = 18542.789983 eV Total energy + Delta-G solvation = -3536.374693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.68362 -41.19755 -40.21297 -38.37880 -36.49758 -34.46726 -32.90181 -32.03582 -31.10715 -29.11544 -27.26295 -25.34364 -24.51767 -23.37939 -22.71886 -21.19004 -20.02783 -19.48995 -17.86015 -17.75781 -17.12213 -16.89285 -16.72369 -16.52655 -15.88426 -15.81986 -15.72150 -15.58653 -15.29377 -14.97776 -14.74133 -14.26191 -14.12248 -13.67446 -13.47392 -13.28648 -13.12990 -12.71892 -12.46342 -12.26593 -12.16845 -12.05962 -11.84497 -11.58863 -11.29858 -10.92967 -10.74244 -10.55059 -9.52832 -8.50718 -8.12142 -6.20417 0.41490 0.53777 1.29828 1.34230 1.48675 2.25151 2.44447 2.69590 2.92034 3.02464 3.05868 3.55798 3.72100 3.88294 3.94146 4.04650 4.15551 4.22725 4.32752 4.39472 4.42720 4.57666 4.72752 4.74254 4.82792 4.88850 4.97544 5.11188 5.13201 5.19898 5.28329 5.32994 5.39996 5.58834 5.84852 6.03441 6.29827 6.49184 6.74843 6.82977 7.53621 8.61283 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.006497 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.683853 B = 4308.409109 C = 6266.129082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.394 4.394 8 H 0.074 0.926 9 O -0.233 6.233 10 C 0.085 3.915 11 C -0.238 4.238 12 C 0.061 3.939 13 F -0.157 7.157 14 C -0.153 4.153 15 C -0.133 4.133 16 C 0.164 3.836 17 N -0.742 5.742 18 C 0.152 3.848 19 C -0.170 4.170 20 C 0.065 3.935 21 O -0.403 6.403 22 C 0.067 3.933 23 C -0.162 4.162 24 H 0.284 0.716 25 H 0.112 0.888 26 H 0.161 0.839 27 H 0.168 0.832 28 H 0.396 0.604 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.774 -2.677 -0.886 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.470 4.470 8 H 0.091 0.909 9 O -0.141 6.141 10 C 0.034 3.966 11 C -0.259 4.259 12 C 0.040 3.960 13 F -0.136 7.136 14 C -0.173 4.173 15 C -0.156 4.156 16 C 0.062 3.938 17 N -0.373 5.373 18 C 0.047 3.953 19 C -0.210 4.210 20 C -0.012 4.012 21 O -0.322 6.322 22 C -0.010 4.010 23 C -0.201 4.201 24 H 0.094 0.906 25 H 0.130 0.870 26 H 0.178 0.822 27 H 0.185 0.815 28 H 0.230 0.770 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.936 -2.286 -0.970 22.076 hybrid contribution -1.711 0.445 0.142 1.773 sum 20.226 -1.841 -0.829 20.326 Atomic orbital electron populations 1.69755 1.07113 1.29570 1.50211 1.25299 0.95859 1.02234 0.95596 0.85179 0.79107 0.77056 0.79127 1.19317 1.19702 1.17652 1.20596 0.78153 0.95836 1.52444 0.90894 1.83420 1.20876 1.25990 1.83790 1.18757 0.91261 0.85083 1.01528 1.20921 1.00678 0.91969 1.12322 1.17398 0.90356 0.80344 1.07943 1.91385 1.78313 1.49165 1.94722 1.20879 0.90062 1.00613 1.05704 1.20461 1.00687 0.88034 1.06409 1.17316 0.86135 0.89234 1.01151 1.44658 1.05408 1.04966 1.82236 1.21069 0.79022 0.99566 0.95597 1.22761 0.97819 1.03162 0.97227 1.22702 0.91065 0.87892 0.99531 1.87917 1.76738 1.44066 1.23515 1.22648 0.92697 1.03761 0.81855 1.22483 0.97709 0.97548 1.02332 0.90642 0.87030 0.82155 0.81469 0.77047 0.88716 0.90126 0.92641 0.87807 0.90934 0.87345 0.91036 0.91835 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.61 0.30 -55.24 16 2 C 0.01 0.47 5.49 84.83 0.47 0.93 16 3 Si 0.97 44.23 28.62 68.60 1.96 46.19 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.39 -23.00 9.94 67.92 0.68 -22.33 16 8 H 0.07 4.59 5.44 -2.91 -0.02 4.58 16 9 O -0.23 -12.04 7.83 -22.91 -0.18 -12.22 16 10 C 0.09 3.87 6.67 22.69 0.15 4.02 16 11 C -0.24 -10.93 9.14 22.41 0.20 -10.72 16 12 C 0.06 2.34 7.29 22.37 0.16 2.51 16 13 F -0.16 -6.07 17.26 44.97 0.78 -5.30 16 14 C -0.15 -4.57 10.02 22.34 0.22 -4.34 16 15 C -0.13 -3.71 8.89 22.38 0.20 -3.51 16 16 C 0.16 5.77 6.66 38.26 0.25 6.02 16 17 N -0.74 -22.44 5.25 -317.86 -1.67 -24.11 16 18 C 0.15 3.19 2.22 45.11 0.10 3.29 16 19 C -0.17 -3.34 5.68 30.75 0.17 -3.17 16 20 C 0.07 1.00 6.85 72.08 0.49 1.49 16 21 O -0.40 -7.62 10.77 -148.98 -1.60 -9.22 16 22 C 0.07 0.99 6.84 72.01 0.49 1.48 16 23 C -0.16 -3.00 5.61 30.69 0.17 -2.83 16 24 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 25 H 0.11 5.78 5.64 -2.91 -0.02 5.76 16 26 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.17 3.24 6.07 -2.91 -0.02 3.23 16 28 H 0.40 13.38 7.97 -92.70 -0.74 12.64 16 29 H 0.10 1.67 6.51 -2.39 -0.02 1.66 16 30 H 0.08 1.57 7.69 -2.39 -0.02 1.55 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.01 309.00 3.73 -63.28 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.37 Total: 23.77 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.77 Total: -27.15 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.37 Total: -79.34 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.78 Total: -21.45 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.78 Total: -5.30 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.96 Total: 46.19 kcal Total: -67.01 3.73 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181541917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.337 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds