Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 S 1.70616 * 124.52083 * 269.70338 * 3 2 1 5 5 C 1.75831 * 91.56184 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45563 * 180.08518 * 5 4 3 7 7 O 1.21706 * 119.99563 * 180.29434 * 6 5 4 8 8 N 1.34768 * 120.00221 * 0.28931 * 6 5 4 9 9 C 1.46505 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46665 * 34.99971 * 9 8 6 11 11 C 1.50694 * 109.47481 * 154.99862 * 9 8 6 12 12 H 1.08006 * 119.99746 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00197 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99941 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46993 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.46915 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47358 * 300.00080 * 15 13 11 19 19 C 1.52996 * 109.47189 * 275.00474 * 9 8 6 20 20 C 1.53006 * 109.47438 * 64.99437 * 19 9 8 21 21 C 1.36645 * 109.08561 * 0.33169 * 5 4 3 22 22 C 1.33814 * 124.52206 * 90.00146 * 3 2 1 23 23 C 1.50699 * 122.44987 * 359.97438 * 22 3 2 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 0.97003 * 120.00328 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00076 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.47109 * 184.99605 * 19 9 8 32 32 H 1.09001 * 109.47007 * 304.99626 * 19 9 8 33 33 H 1.08999 * 109.46707 * 179.97438 * 20 19 9 34 34 H 1.08994 * 109.47164 * 300.00543 * 20 19 9 35 35 H 1.08996 * 109.46644 * 60.00528 * 20 19 9 36 36 H 1.07999 * 123.35649 * 179.74324 * 21 5 4 37 37 H 1.08998 * 109.47223 * 89.99813 * 23 22 3 38 38 H 1.09001 * 109.46788 * 210.00040 * 23 22 3 39 39 H 1.08996 * 109.47018 * 329.99369 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3614 2.3300 -1.4057 5 6 2.8477 3.7229 -0.4492 6 6 3.3027 5.0078 -0.9884 7 8 3.6215 5.9065 -0.2321 8 7 3.3679 5.1940 -2.3216 9 6 3.8231 6.4780 -2.8606 10 1 4.5955 6.8910 -2.2117 11 6 4.3860 6.2713 -4.2430 12 1 4.4027 5.2825 -4.6770 13 6 4.8799 7.3446 -4.9539 14 7 4.8600 8.5486 -4.4252 15 14 5.5770 7.0885 -6.6679 16 1 4.5241 6.5266 -7.5517 17 1 6.0385 8.3900 -7.2141 18 1 6.7220 6.1453 -6.6007 19 6 2.6428 7.4490 -2.9303 20 6 2.1504 7.7560 -1.5146 21 6 2.7389 3.4139 0.8774 22 6 2.2851 2.1358 1.1025 23 6 2.0881 1.5802 2.4894 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1134 4.4778 -2.9244 30 1 5.2078 9.3036 -4.9251 31 1 2.9608 8.3733 -3.4128 32 1 1.8348 6.9979 -3.5062 33 1 1.3099 8.4481 -1.5644 34 1 1.8325 6.8317 -1.0321 35 1 2.9584 8.2071 -0.9388 36 1 2.9843 4.1050 1.6702 37 1 3.0093 1.1034 2.8240 38 1 1.8294 2.3899 3.1718 39 1 1.2830 0.8457 2.4755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183810171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -31.328770 kcal Electronic energy + Delta-G solvation = -19732.860469 eV Core-core repulsion = 16766.180429 eV Total energy + Delta-G solvation = -2966.680040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27657 -38.24625 -35.07740 -33.78373 -32.40001 -31.10202 -30.10771 -27.61276 -26.93704 -24.51607 -22.94422 -22.31387 -20.48205 -19.44617 -18.60804 -17.72360 -16.60288 -15.60039 -15.33092 -14.87712 -14.58603 -14.36894 -14.13731 -13.87833 -13.33478 -13.05145 -12.71689 -12.68122 -12.36069 -12.17422 -12.09733 -11.66465 -11.43503 -11.37642 -11.24242 -11.22755 -10.98597 -10.81836 -10.67760 -10.33344 -10.17772 -9.63223 -9.20008 -9.05370 -8.50817 -8.49949 -8.29214 -7.83836 -6.12251 -4.21919 0.72615 1.62226 2.04844 2.52484 3.26162 3.31337 3.32617 3.86670 4.04714 4.37994 4.57830 4.82684 5.05660 5.10888 5.19127 5.23972 5.34178 5.53441 5.54839 5.61223 5.63769 5.76621 5.84140 5.99630 6.09983 6.40025 6.40528 6.47503 6.54605 6.66950 7.05402 7.19812 7.35052 7.41499 7.61411 7.72066 7.89182 8.17022 8.61336 8.75755 9.05921 9.45000 10.93138 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025216 B = 0.004316 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.143660 B = 6486.551658 C = 7125.385170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.211 4.211 4 S 0.192 5.808 5 C -0.241 4.241 6 C 0.573 3.427 7 O -0.536 6.536 8 N -0.701 5.701 9 C 0.271 3.729 10 H 0.052 0.948 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.902 3.098 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.067 4.067 22 C -0.118 4.118 23 C -0.091 4.091 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.385 0.615 30 H 0.265 0.735 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.023 0.977 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.150 0.850 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 -15.842 8.343 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.331 4.331 4 S 0.462 5.538 5 C -0.362 4.362 6 C 0.357 3.643 7 O -0.417 6.417 8 N -0.349 5.349 9 C 0.170 3.830 10 H 0.070 0.930 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.519 5.519 15 Si 0.729 3.271 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.166 4.166 20 C -0.196 4.196 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.218 0.782 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.513 -15.242 7.205 18.458 hybrid contribution 0.347 -0.120 0.307 0.479 sum -7.165 -15.362 7.512 18.541 Atomic orbital electron populations 1.21791 0.94365 1.01803 1.02635 1.20071 0.96136 0.89712 1.03120 1.23963 1.09501 1.02007 0.97603 1.83015 1.60326 1.02886 1.07588 1.24991 1.13771 0.99650 0.97797 1.16951 0.78876 0.84971 0.83515 1.90795 1.50153 1.42420 1.58283 1.46446 1.65226 1.18458 1.04722 1.18844 0.92637 0.77794 0.93768 0.93039 1.21181 1.41532 0.94614 1.00119 0.92121 1.24873 0.95390 0.94919 0.98364 1.69884 1.45168 0.99113 1.37733 0.86507 0.79423 0.77470 0.83711 1.20124 1.21098 1.20152 1.21943 0.97288 1.02948 0.94462 1.21851 0.99303 0.99462 0.98967 1.20564 0.98260 0.95725 0.95433 1.18615 1.04219 0.94062 0.96232 1.20486 1.01785 1.00852 0.91904 0.92327 0.92145 0.92268 0.90100 0.90864 0.78227 0.92468 0.88129 0.94972 0.95749 0.94294 0.93085 0.83275 0.91443 0.91489 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.05 -0.45 5.72 -27.88 -0.16 -0.61 16 3 C -0.21 -2.50 5.53 -35.86 -0.20 -2.70 16 4 S 0.19 2.61 22.10 -107.50 -2.38 0.23 16 5 C -0.24 -4.14 6.45 -36.79 -0.24 -4.38 16 6 C 0.57 12.16 6.35 -12.90 -0.08 12.08 16 7 O -0.54 -13.01 13.97 5.18 0.07 -12.94 16 8 N -0.70 -15.28 5.02 -56.27 -0.28 -15.56 16 9 C 0.27 6.94 2.24 -69.08 -0.15 6.78 16 10 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 11 C -0.54 -14.28 8.73 -34.44 -0.30 -14.58 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 13 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 14 N -0.88 -24.71 11.30 55.43 0.63 -24.08 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 20 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 21 C -0.07 -1.03 9.80 -40.43 -0.40 -1.42 16 22 C -0.12 -1.48 5.78 -106.45 -0.62 -2.09 16 23 C -0.09 -0.84 9.55 36.00 0.34 -0.50 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.47 7.80 -51.93 -0.41 0.07 16 27 H 0.08 0.61 7.25 -51.93 -0.38 0.23 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.39 7.51 7.65 -40.82 -0.31 7.19 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.10 2.72 5.96 -51.93 -0.31 2.41 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 35 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 36 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -29.85 330.21 -9.14 -38.99 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.78 Total: 5.41 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.36 Total: -12.62 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.34 Total: -39.64 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.38 Total: 0.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.85 -9.14 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.657 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds