Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 S 1.70616 * 124.52083 * 269.70338 * 3 2 1 5 5 C 1.75831 * 91.56184 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45563 * 180.08518 * 5 4 3 7 7 O 1.21706 * 119.99563 * 180.29434 * 6 5 4 8 8 N 1.34768 * 120.00221 * 0.28931 * 6 5 4 9 9 C 1.46505 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46665 * 34.99971 * 9 8 6 11 11 C 1.50694 * 109.47481 * 154.99862 * 9 8 6 12 12 H 1.08006 * 119.99746 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00197 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99941 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46993 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.46915 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47358 * 300.00080 * 15 13 11 19 19 C 1.52996 * 109.47189 * 275.00474 * 9 8 6 20 20 C 1.53006 * 109.47438 * 64.99437 * 19 9 8 21 21 C 1.36645 * 109.08561 * 0.33169 * 5 4 3 22 22 C 1.33814 * 124.52206 * 90.00146 * 3 2 1 23 23 C 1.50699 * 122.44987 * 359.97438 * 22 3 2 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 0.97003 * 120.00328 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00076 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.47109 * 184.99605 * 19 9 8 32 32 H 1.09001 * 109.47007 * 304.99626 * 19 9 8 33 33 H 1.08999 * 109.46707 * 179.97438 * 20 19 9 34 34 H 1.08994 * 109.47164 * 300.00543 * 20 19 9 35 35 H 1.08996 * 109.46644 * 60.00528 * 20 19 9 36 36 H 1.07999 * 123.35649 * 179.74324 * 21 5 4 37 37 H 1.08998 * 109.47223 * 89.99813 * 23 22 3 38 38 H 1.09001 * 109.46788 * 210.00040 * 23 22 3 39 39 H 1.08996 * 109.47018 * 329.99369 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3614 2.3300 -1.4057 5 6 2.8477 3.7229 -0.4492 6 6 3.3027 5.0078 -0.9884 7 8 3.6215 5.9065 -0.2321 8 7 3.3679 5.1940 -2.3216 9 6 3.8231 6.4780 -2.8606 10 1 4.5955 6.8910 -2.2117 11 6 4.3860 6.2713 -4.2430 12 1 4.4027 5.2825 -4.6770 13 6 4.8799 7.3446 -4.9539 14 7 4.8600 8.5486 -4.4252 15 14 5.5770 7.0885 -6.6679 16 1 4.5241 6.5266 -7.5517 17 1 6.0385 8.3900 -7.2141 18 1 6.7220 6.1453 -6.6007 19 6 2.6428 7.4490 -2.9303 20 6 2.1504 7.7560 -1.5146 21 6 2.7389 3.4139 0.8774 22 6 2.2851 2.1358 1.1025 23 6 2.0881 1.5802 2.4894 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1134 4.4778 -2.9244 30 1 5.2078 9.3036 -4.9251 31 1 2.9608 8.3733 -3.4128 32 1 1.8348 6.9979 -3.5062 33 1 1.3099 8.4481 -1.5644 34 1 1.8325 6.8317 -1.0321 35 1 2.9584 8.2071 -0.9388 36 1 2.9843 4.1050 1.6702 37 1 3.0093 1.1034 2.8240 38 1 1.8294 2.3899 3.1718 39 1 1.2830 0.8457 2.4755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183810171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -48.607725 kcal Electronic energy + Delta-G solvation = -19733.609740 eV Core-core repulsion = 16766.180429 eV Total energy + Delta-G solvation = -2967.429311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84621 -39.44332 -36.96808 -34.71126 -34.32995 -32.92617 -31.16663 -29.15451 -28.21553 -25.90980 -24.68087 -23.27943 -22.08394 -21.31040 -19.88339 -19.04762 -18.18992 -17.31518 -16.87920 -16.38877 -16.33645 -15.42372 -15.23392 -15.14590 -14.62933 -14.51383 -14.15573 -13.86180 -13.56317 -13.41459 -13.20746 -13.12598 -12.98554 -12.91702 -12.67750 -12.55320 -12.21979 -12.20050 -12.07494 -12.01894 -11.63037 -11.60334 -11.11325 -10.92798 -10.55149 -9.83098 -9.57581 -9.29256 -8.17827 -6.36018 -0.45547 0.49624 0.96128 1.39651 1.44492 1.46613 1.54461 2.28233 2.32923 2.55797 3.11459 3.74380 3.93922 4.13893 4.23905 4.43113 4.45078 4.48576 4.53068 4.53179 4.71070 4.85039 4.88298 4.92994 5.02176 5.04673 5.08094 5.15501 5.22345 5.34484 5.39354 5.43893 5.48896 5.55976 5.58758 5.74289 5.86478 6.12122 6.69258 6.84604 7.27323 7.43395 8.87643 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025216 B = 0.004316 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.143660 B = 6486.551658 C = 7125.385170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.189 4.189 4 S 0.215 5.785 5 C -0.293 4.293 6 C 0.572 3.428 7 O -0.579 6.579 8 N -0.701 5.701 9 C 0.278 3.722 10 H 0.002 0.998 11 C -0.553 4.553 12 H 0.070 0.930 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.972 3.028 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.057 4.057 22 C -0.131 4.131 23 C -0.089 4.089 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.397 0.603 30 H 0.266 0.734 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -18.951 8.120 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.308 4.308 4 S 0.485 5.515 5 C -0.413 4.413 6 C 0.359 3.641 7 O -0.462 6.462 8 N -0.349 5.349 9 C 0.176 3.824 10 H 0.019 0.981 11 C -0.591 4.591 12 H 0.088 0.912 13 C -0.182 4.182 14 N -0.551 5.551 15 Si 0.796 3.204 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.159 4.159 20 C -0.182 4.182 21 C -0.091 4.091 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.231 0.769 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.160 0.840 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.707 -18.389 6.976 21.508 hybrid contribution 0.682 0.741 0.466 1.110 sum -8.025 -17.647 7.442 20.765 Atomic orbital electron populations 1.21796 0.93355 1.03152 1.02194 1.20292 0.96833 0.87383 1.04770 1.24516 1.06737 1.03163 0.96431 1.82859 1.59703 1.01130 1.07810 1.24555 1.17927 0.99572 0.99238 1.17443 0.77680 0.86158 0.82779 1.90754 1.51965 1.44476 1.59000 1.46198 1.65622 1.17596 1.05469 1.18458 0.91809 0.79514 0.92660 0.98058 1.21509 1.41912 0.95196 1.00532 0.91215 1.25765 0.95521 0.94506 1.02403 1.70035 1.45807 0.99950 1.39318 0.85405 0.78868 0.77380 0.78744 1.18823 1.20958 1.19658 1.21794 0.97151 1.01689 0.95313 1.21686 0.99219 0.99841 0.97430 1.20780 0.96869 0.96879 0.94568 1.18849 1.04301 0.92905 0.98273 1.20563 1.03139 1.01401 0.89667 0.93241 0.89963 0.92318 0.87959 0.89729 0.76864 0.92441 0.90510 0.94069 0.93254 0.94250 0.95353 0.84034 0.90287 0.91238 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.05 -0.72 5.72 29.85 0.17 -0.55 16 3 C -0.19 -3.95 5.53 24.68 0.14 -3.82 16 4 S 0.21 5.53 22.10 -56.49 -1.25 4.29 16 5 C -0.29 -10.16 6.45 24.08 0.16 -10.00 16 6 C 0.57 25.32 6.35 86.42 0.55 25.87 16 7 O -0.58 -29.75 13.97 -4.37 -0.06 -29.81 16 8 N -0.70 -31.60 5.02 -450.17 -2.26 -33.86 16 9 C 0.28 14.89 2.24 44.24 0.10 14.99 16 10 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 11 C -0.55 -30.05 8.73 25.60 0.22 -29.82 16 12 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 13 C 0.02 1.01 5.29 84.65 0.45 1.46 16 14 N -0.91 -52.67 11.30 21.45 0.24 -52.42 16 15 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C -0.12 -6.15 5.45 30.59 0.17 -5.99 16 20 C -0.12 -5.87 8.51 71.98 0.61 -5.26 16 21 C -0.06 -1.72 9.80 21.72 0.21 -1.51 16 22 C -0.13 -3.00 5.78 -21.05 -0.12 -3.12 16 23 C -0.09 -1.37 9.55 71.24 0.68 -0.69 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.71 7.80 -2.39 -0.02 0.69 16 27 H 0.10 1.03 7.25 -2.39 -0.02 1.01 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.40 15.73 7.65 -92.71 -0.71 15.02 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.08 4.31 5.96 -2.39 -0.01 4.30 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 1.83 5.64 -2.39 -0.01 1.81 16 35 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 36 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 39 H 0.09 0.97 6.86 -2.39 -0.02 0.95 16 Total: -1.00 -67.32 330.21 3.09 -64.23 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.34 Total: 22.65 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.05 Total: -19.45 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.02 Total: -86.28 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.25 Total: 4.29 kcal Total: -67.32 3.09 -64.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.625 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds