Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47054 * 2 1 4 4 C 1.50698 * 109.47022 * 120.00328 * 2 1 3 5 5 C 1.33812 * 124.52670 * 120.00143 * 4 2 1 6 6 C 1.37474 * 115.10153 * 179.74710 * 5 4 2 7 7 C 1.36647 * 113.29620 * 0.49423 * 6 5 4 8 8 C 1.46586 * 125.45577 * 179.80409 * 7 6 5 9 9 O 1.21695 * 120.00258 * 359.71503 * 8 7 6 10 10 N 1.34774 * 119.99696 * 179.71688 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99896 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99699 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47454 * 60.00119 * 18 16 14 20 20 H 1.48496 * 109.46966 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99910 * 18 16 14 22 22 S 1.70623 * 124.51918 * 300.02308 * 4 2 1 23 23 H 1.09001 * 109.47315 * 299.99756 * 1 2 3 24 24 H 1.09002 * 109.47025 * 60.00260 * 1 2 3 25 25 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47001 * 239.99850 * 2 1 3 27 27 H 1.08997 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47082 * 299.99935 * 3 2 1 29 29 H 1.09005 * 109.47339 * 60.00057 * 3 2 1 30 30 H 1.08004 * 122.44732 * 359.97438 * 5 4 2 31 31 H 1.08006 * 123.35364 * 180.29446 * 6 5 4 32 32 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 34 34 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 35 35 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 36 36 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 37 37 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 38 38 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 39 39 H 0.97007 * 119.99539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8048 -1.8029 1.2131 6 6 3.1552 -2.2891 2.4504 7 6 2.6339 -1.5628 3.4838 8 6 2.8336 -1.8463 4.9081 9 8 3.5082 -2.7997 5.2500 10 7 2.2702 -1.0509 5.8389 11 6 2.4693 -1.3345 7.2624 12 6 1.7286 -0.2894 8.0991 13 6 1.9371 -0.5852 9.5856 14 6 1.2080 0.4445 10.4098 15 1 0.6512 1.2309 9.9221 16 6 1.2509 0.3819 11.7865 17 7 1.9285 -0.5760 12.3804 18 14 0.3466 1.6578 12.8081 19 1 -1.1035 1.6081 12.4918 20 1 0.5491 1.3708 14.2509 21 1 0.8757 3.0093 12.4937 22 16 1.6914 -0.2295 2.8315 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1323 -2.2666 0.2943 31 1 3.7778 -3.1603 2.5916 32 1 1.7328 -0.2908 5.5664 33 1 2.0806 -2.3263 7.4932 34 1 3.5338 -1.2984 7.4946 35 1 2.1171 0.7025 7.8684 36 1 0.6643 -0.3260 7.8668 37 1 1.5489 -1.5772 9.8167 38 1 3.0015 -0.5484 9.8176 39 1 1.9590 -0.6198 13.3490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185848568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -39.040994 kcal Electronic energy + Delta-G solvation = -18600.113142 eV Core-core repulsion = 15633.098675 eV Total energy + Delta-G solvation = -2967.014467 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62310 -38.31915 -35.60702 -35.20732 -33.33595 -31.34876 -29.35310 -27.59487 -26.85986 -25.01027 -23.11038 -21.65428 -21.07516 -20.63919 -19.27285 -17.83828 -16.57014 -16.13166 -15.56346 -15.38586 -14.85028 -14.76952 -14.44591 -14.26077 -13.95174 -13.79070 -13.27528 -12.86694 -12.47387 -12.41401 -12.27753 -11.87573 -11.74727 -11.71139 -11.55689 -11.54358 -10.92959 -10.88821 -10.74617 -10.63038 -10.05781 -9.87710 -9.42696 -9.14040 -9.00512 -8.77864 -8.70416 -8.37119 -6.01844 -4.05081 0.35488 1.25980 1.70271 2.24311 3.27325 3.31335 3.32146 3.36969 3.39343 4.18022 4.44226 4.46610 4.68349 4.85422 4.96322 5.15264 5.18449 5.27496 5.33857 5.38827 5.39488 5.56614 5.65206 5.74445 5.75807 5.79102 5.85924 5.99845 6.14184 6.16973 6.41169 6.57962 6.79714 6.98205 7.61124 7.62950 7.75505 7.96639 8.27287 8.38035 9.01296 9.59035 11.09441 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002879 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.755146 B = 9723.774253 C =10568.865996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.191 4.191 5 C -0.153 4.153 6 C -0.057 4.057 7 C -0.263 4.263 8 C 0.583 3.417 9 O -0.533 6.533 10 N -0.721 5.721 11 C 0.117 3.883 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 S 0.204 5.796 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.395 0.605 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 1.914 -27.325 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.311 4.311 5 C -0.184 4.184 6 C -0.090 4.090 7 C -0.383 4.383 8 C 0.369 3.631 9 O -0.412 6.412 10 N -0.371 5.371 11 C -0.006 4.006 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 S 0.472 5.528 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.633 2.347 -26.201 26.356 hybrid contribution 0.148 -0.209 -0.180 0.313 sum -1.485 2.138 -26.380 26.508 Atomic orbital electron populations 1.21952 0.93740 1.02571 1.02470 1.19771 0.96048 0.95711 0.93239 1.21949 1.01712 0.94596 1.02472 1.24291 1.04942 1.01644 1.00174 1.19960 1.01934 0.97603 0.98868 1.20739 0.98299 0.99754 0.90225 1.24743 1.11273 1.04479 0.97802 1.16993 0.79845 0.82786 0.83505 1.90825 1.39788 1.29144 1.81435 1.46114 1.52644 1.30707 1.07665 1.21717 1.01374 1.00423 0.77038 1.21908 0.98799 0.96654 0.98614 1.19024 0.97528 0.97328 0.87434 1.21167 1.31616 1.12201 0.91212 0.92669 1.25029 0.95525 0.95788 0.98097 1.69957 1.41382 1.32327 1.09610 0.86636 0.80234 0.81857 0.79132 1.20230 1.21266 1.20233 1.82954 1.47426 1.26513 0.95876 0.92212 0.91720 0.92046 0.89327 0.92047 0.91717 0.92214 0.84011 0.83015 0.77107 0.91418 0.91411 0.92643 0.92640 0.96217 0.96215 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.08 37.16 0.34 -0.55 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.89 9.08 37.16 0.34 -0.55 16 4 C -0.19 -1.68 4.95 -35.86 -0.18 -1.85 16 5 C -0.15 -1.42 9.95 -41.41 -0.41 -1.83 16 6 C -0.06 -0.66 10.01 -40.43 -0.40 -1.07 16 7 C -0.26 -3.42 6.45 -36.79 -0.24 -3.66 16 8 C 0.58 9.52 7.78 -12.90 -0.10 9.42 16 9 O -0.53 -10.57 16.84 5.19 0.09 -10.48 16 10 N -0.72 -11.17 5.55 -61.64 -0.34 -11.51 16 11 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 12 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 S 0.20 2.01 21.37 -107.50 -2.30 -0.28 16 23 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.40 5.15 7.59 -40.82 -0.31 4.84 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -32.21 343.99 -9.49 -41.70 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.16 Total: -0.94 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.67 Total: -13.98 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.39 Total: -37.66 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.30 Total: -0.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.21 -9.49 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185848568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds