Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47054 * 2 1 4 4 C 1.50698 * 109.47022 * 120.00328 * 2 1 3 5 5 C 1.33812 * 124.52670 * 120.00143 * 4 2 1 6 6 C 1.37474 * 115.10153 * 179.74710 * 5 4 2 7 7 C 1.36647 * 113.29620 * 0.49423 * 6 5 4 8 8 C 1.46586 * 125.45577 * 179.80409 * 7 6 5 9 9 O 1.21695 * 120.00258 * 359.71503 * 8 7 6 10 10 N 1.34774 * 119.99696 * 179.71688 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99896 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99699 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47454 * 60.00119 * 18 16 14 20 20 H 1.48496 * 109.46966 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99910 * 18 16 14 22 22 S 1.70623 * 124.51918 * 300.02308 * 4 2 1 23 23 H 1.09001 * 109.47315 * 299.99756 * 1 2 3 24 24 H 1.09002 * 109.47025 * 60.00260 * 1 2 3 25 25 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47001 * 239.99850 * 2 1 3 27 27 H 1.08997 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47082 * 299.99935 * 3 2 1 29 29 H 1.09005 * 109.47339 * 60.00057 * 3 2 1 30 30 H 1.08004 * 122.44732 * 359.97438 * 5 4 2 31 31 H 1.08006 * 123.35364 * 180.29446 * 6 5 4 32 32 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 34 34 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 35 35 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 36 36 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 37 37 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 38 38 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 39 39 H 0.97007 * 119.99539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8048 -1.8029 1.2131 6 6 3.1552 -2.2891 2.4504 7 6 2.6339 -1.5628 3.4838 8 6 2.8336 -1.8463 4.9081 9 8 3.5082 -2.7997 5.2500 10 7 2.2702 -1.0509 5.8389 11 6 2.4693 -1.3345 7.2624 12 6 1.7286 -0.2894 8.0991 13 6 1.9371 -0.5852 9.5856 14 6 1.2080 0.4445 10.4098 15 1 0.6512 1.2309 9.9221 16 6 1.2509 0.3819 11.7865 17 7 1.9285 -0.5760 12.3804 18 14 0.3466 1.6578 12.8081 19 1 -1.1035 1.6081 12.4918 20 1 0.5491 1.3708 14.2509 21 1 0.8757 3.0093 12.4937 22 16 1.6914 -0.2295 2.8315 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1323 -2.2666 0.2943 31 1 3.7778 -3.1603 2.5916 32 1 1.7328 -0.2908 5.5664 33 1 2.0806 -2.3263 7.4932 34 1 3.5338 -1.2984 7.4946 35 1 2.1171 0.7025 7.8684 36 1 0.6643 -0.3260 7.8668 37 1 1.5489 -1.5772 9.8167 38 1 3.0015 -0.5484 9.8176 39 1 1.9590 -0.6198 13.3490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185848568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -58.141314 kcal Electronic energy + Delta-G solvation = -18600.941394 eV Core-core repulsion = 15633.098675 eV Total energy + Delta-G solvation = -2967.842719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87302 -39.13431 -37.04148 -36.00549 -35.24353 -33.15425 -30.39233 -28.52297 -28.02971 -26.14596 -24.73084 -22.49162 -22.38003 -21.98691 -20.31889 -18.87659 -18.52135 -17.26802 -16.81682 -16.73325 -16.43489 -15.83842 -15.55983 -15.32798 -14.90234 -14.63824 -14.32576 -14.13373 -13.79167 -13.66340 -13.38825 -13.22870 -12.92436 -12.72056 -12.58120 -12.45707 -12.35180 -12.11537 -12.07079 -11.70817 -11.65890 -11.55208 -11.30429 -11.10233 -10.55137 -10.31374 -9.66617 -9.54366 -8.19668 -6.31433 -0.53889 0.42800 0.89883 1.36204 1.41813 1.45051 1.52887 2.04854 2.11645 2.42567 3.14062 3.57719 3.75197 3.98285 4.11854 4.16261 4.21233 4.31046 4.44084 4.50343 4.63251 4.77257 4.83845 4.89394 4.89783 4.96595 5.05678 5.10431 5.13616 5.21558 5.30456 5.34001 5.35945 5.41760 5.50154 5.68518 5.82933 6.21151 6.37397 6.85558 7.02534 7.38161 8.92351 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002879 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.755146 B = 9723.774253 C =10568.865996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.176 4.176 5 C -0.161 4.161 6 C -0.052 4.052 7 C -0.305 4.305 8 C 0.583 3.417 9 O -0.579 6.579 10 N -0.713 5.713 11 C 0.129 3.871 12 C -0.103 4.103 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.265 1.265 22 S 0.233 5.767 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.409 0.591 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 3.899 -29.711 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.296 4.296 5 C -0.190 4.190 6 C -0.086 4.086 7 C -0.425 4.425 8 C 0.371 3.629 9 O -0.462 6.462 10 N -0.363 5.363 11 C 0.006 3.994 12 C -0.141 4.141 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.190 1.190 22 S 0.502 5.498 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.062 4.367 -28.614 29.107 hybrid contribution 0.586 -0.827 0.441 1.105 sum -2.476 3.540 -28.174 28.503 Atomic orbital electron populations 1.21973 0.93156 1.02587 1.03096 1.19931 0.96448 0.95951 0.92497 1.21971 1.01553 0.94187 1.03098 1.24755 1.03302 1.00977 1.00555 1.20140 1.02178 0.97908 0.98813 1.20943 0.97417 0.99261 0.90993 1.24469 1.14597 1.07409 0.96052 1.17429 0.78739 0.81867 0.84893 1.90788 1.41838 1.31045 1.82494 1.45880 1.52852 1.31231 1.06383 1.21339 1.00230 0.99275 0.78578 1.21622 0.99907 0.97599 0.94951 1.18929 0.95442 0.95692 0.91229 1.21653 1.31692 1.12783 0.91969 0.91466 1.26034 0.96375 0.98013 0.99664 1.70109 1.43013 1.34450 1.09979 0.85457 0.79219 0.79123 0.76989 1.18965 1.21161 1.18976 1.82801 1.46137 1.24610 0.96287 0.92750 0.90036 0.92347 0.87579 0.92347 0.90032 0.92752 0.81397 0.83514 0.75466 0.92701 0.92694 0.91270 0.91264 0.98849 0.98847 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.08 71.98 0.65 -0.67 16 2 C -0.03 -0.27 3.25 -11.54 -0.04 -0.31 16 3 C -0.15 -1.33 9.08 71.98 0.65 -0.67 16 4 C -0.18 -2.64 4.95 24.68 0.12 -2.52 16 5 C -0.16 -2.63 9.95 21.08 0.21 -2.42 16 6 C -0.05 -1.17 10.01 21.72 0.22 -0.95 16 7 C -0.31 -7.87 6.45 24.08 0.16 -7.71 16 8 C 0.58 19.44 7.78 86.42 0.67 20.11 16 9 O -0.58 -24.01 16.84 -4.33 -0.07 -24.08 16 10 N -0.71 -22.17 5.55 -467.16 -2.59 -24.76 16 11 C 0.13 4.80 5.67 86.38 0.49 5.29 16 12 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 13 C 0.02 1.30 4.97 29.85 0.15 1.45 16 14 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 S 0.23 4.20 21.37 -56.49 -1.21 3.00 16 23 H 0.05 0.54 7.90 -2.39 -0.02 0.52 16 24 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.11 0.73 8.07 -2.38 -0.02 0.71 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.54 7.90 -2.38 -0.02 0.52 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.41 10.29 7.59 -92.71 -0.70 9.59 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 39 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -70.88 343.99 2.91 -67.98 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.33 Total: 11.46 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.14 Total: -22.28 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.31 Total: -81.96 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.21 Total: 3.00 kcal Total: -70.88 2.91 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185848568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.835 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds