Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47363 * 180.95340 * 3 2 1 5 5 C 1.52994 * 109.47362 * 300.95599 * 3 2 1 6 6 N 1.46504 * 109.47386 * 60.95582 * 3 2 1 7 7 C 1.46491 * 120.00179 * 240.35954 * 6 3 2 8 8 C 1.50703 * 109.47306 * 96.38101 * 7 6 3 9 9 H 1.07993 * 119.99839 * 4.48447 * 8 7 6 10 10 C 1.37879 * 120.00084 * 184.47897 * 8 7 6 11 11 N 1.31512 * 119.99896 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47470 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47117 * 120.00170 * 12 10 8 15 15 H 1.48509 * 109.46622 * 239.99595 * 12 10 8 16 16 C 1.34779 * 119.99965 * 60.35601 * 6 3 2 17 17 O 1.21638 * 119.99973 * 207.45362 * 16 6 3 18 18 C 1.47185 * 119.99905 * 27.45128 * 16 6 3 19 19 C 1.44431 * 123.46183 * 143.69864 * 18 16 6 20 20 C 1.32771 * 113.08521 * 179.80466 * 19 18 16 21 21 S 1.75511 * 110.57427 * 0.44767 * 20 19 18 22 22 C 1.36015 * 123.46329 * 323.99363 * 18 16 6 23 23 H 1.08999 * 109.47283 * 176.81889 * 1 2 3 24 24 H 1.09002 * 109.47206 * 296.81933 * 1 2 3 25 25 H 1.08997 * 109.46392 * 56.81855 * 1 2 3 26 26 H 1.08997 * 109.47011 * 239.99656 * 2 1 3 27 27 H 1.09008 * 109.46654 * 120.00060 * 2 1 3 28 28 H 1.08999 * 109.47223 * 145.12771 * 4 3 2 29 29 H 1.09001 * 109.47570 * 265.13402 * 4 3 2 30 30 H 1.09001 * 109.46946 * 25.12924 * 4 3 2 31 31 H 1.09000 * 109.46833 * 300.00269 * 5 3 2 32 32 H 1.09005 * 109.47318 * 59.99539 * 5 3 2 33 33 H 1.08995 * 109.47660 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47460 * 216.38529 * 7 6 3 35 35 H 1.09001 * 109.47212 * 336.38393 * 7 6 3 36 36 H 0.97000 * 120.00522 * 179.97438 * 11 10 8 37 37 H 1.07998 * 123.45245 * 0.02562 * 19 18 16 38 38 H 1.07992 * 124.71391 * 180.17781 * 20 19 18 39 39 H 1.07997 * 124.59217 * 0.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5699 1.4424 -0.0240 5 6 1.5106 2.1706 -1.2370 6 7 1.5707 2.1264 1.2075 7 6 0.7202 3.3136 1.0931 8 6 -0.7256 2.9109 1.2300 9 1 -0.9816 1.8869 1.4585 10 6 -1.7215 3.8498 1.0635 11 7 -1.4097 5.0969 0.7858 12 14 -3.5135 3.3507 1.2338 13 1 -3.5962 1.9016 1.5472 14 1 -4.1428 4.1313 2.3292 15 1 -4.2262 3.6226 -0.0404 16 6 1.9214 1.6634 2.4237 17 8 1.1984 1.8614 3.3816 18 6 3.1793 0.9180 2.5928 19 6 4.0164 1.0241 3.7650 20 6 5.0994 0.2585 3.7023 21 16 5.1449 -0.6224 2.1849 22 6 3.6758 0.0631 1.6587 23 1 -0.3634 -1.0261 -0.0570 24 1 -0.3634 0.4637 0.9171 25 1 -0.3632 0.5624 -0.8601 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.9241 2.2888 -0.6125 29 1 3.9494 1.5239 0.9946 30 1 3.9263 0.5145 -0.4712 31 1 1.8599 1.6617 -2.1354 32 1 0.4207 2.1706 -1.2199 33 1 1.8743 3.1981 -1.2372 34 1 0.9763 4.0215 1.8814 35 1 0.8768 3.7804 0.1207 36 1 -2.1103 5.7574 0.6683 37 1 3.7833 1.6581 4.6076 38 1 5.8503 0.1908 4.4754 39 1 3.2035 -0.1518 0.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187510640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = 81.650262 kcal Electronic energy + Delta-G solvation = -21458.011309 eV Core-core repulsion = 18496.230408 eV Total energy + Delta-G solvation = -2961.780901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83858 -36.95207 -36.70490 -33.26817 -31.80221 -31.10441 -29.69818 -27.32917 -26.48160 -24.35176 -23.34323 -22.47587 -21.18028 -19.78791 -17.84935 -17.18228 -16.63766 -15.81250 -15.16443 -14.82768 -14.66810 -14.24718 -14.09903 -13.89204 -13.49702 -12.93511 -12.57390 -12.41129 -12.10998 -12.01685 -11.69521 -11.51419 -11.29577 -11.19075 -11.02882 -10.95373 -10.86552 -10.61575 -10.47968 -10.42061 -10.00680 -9.76756 -9.34282 -8.91122 -8.44103 -8.36340 -8.07407 -7.49948 -5.97794 -3.99335 1.05214 1.67726 2.02612 2.38990 3.33138 3.41549 3.46388 3.71182 3.92867 4.50662 4.86392 4.96516 5.09621 5.22621 5.30142 5.36283 5.46005 5.56452 5.69606 5.72574 5.80655 5.99622 6.06402 6.09303 6.16102 6.22601 6.28555 6.34742 6.46291 6.50223 6.60866 6.85712 7.03125 7.17037 7.44304 7.69582 8.02629 8.30346 8.50035 8.97982 9.12204 9.64398 11.10064 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.006025 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.178554 B = 4646.538492 C = 5022.036555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.157 4.157 3 C 0.169 3.831 4 C -0.208 4.208 5 C -0.148 4.148 6 N -0.594 5.594 7 C 0.246 3.754 8 C -0.509 4.509 9 H 0.068 0.932 10 C 0.057 3.943 11 N -0.900 5.900 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.575 3.425 17 O -0.517 6.517 18 C -0.183 4.183 19 C -0.078 4.078 20 C -0.248 4.248 21 S 0.128 5.872 22 C -0.212 4.212 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.260 0.740 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 -10.767 -2.629 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.083 3.917 4 C -0.265 4.265 5 C -0.205 4.205 6 N -0.327 5.327 7 C 0.127 3.873 8 C -0.548 4.548 9 H 0.086 0.914 10 C -0.143 4.143 11 N -0.540 5.540 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.212 1.212 16 C 0.359 3.641 17 O -0.393 6.393 18 C -0.199 4.199 19 C -0.107 4.107 20 C -0.382 4.382 21 S 0.391 5.609 22 C -0.347 4.347 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 14.001 -11.467 -2.762 18.307 hybrid contribution -1.994 0.928 0.674 2.301 sum 12.007 -10.539 -2.088 16.112 Atomic orbital electron populations 1.21995 0.93898 1.00263 1.05132 1.22530 0.98989 0.96256 1.01694 1.20338 0.92164 0.92054 0.87123 1.23842 0.96607 1.01197 1.04865 1.22144 1.04005 0.99924 0.94463 1.48032 1.51045 1.30698 1.02950 1.19387 0.88820 0.80909 0.98169 1.21638 0.90611 0.96050 1.46501 0.91380 1.24920 0.98979 0.94872 0.95554 1.69934 1.32852 1.01811 1.49445 0.86539 0.85261 0.78777 0.77466 1.19769 1.21092 1.21210 1.17426 0.83847 0.79020 0.83757 1.90773 1.51802 1.56029 1.40675 1.20687 0.99936 1.03600 0.95712 1.21150 0.92804 0.99201 0.97559 1.25267 1.04517 1.06037 1.02417 1.82962 1.20093 1.45709 1.12160 1.27829 1.01544 1.00016 1.05340 0.94223 0.89813 0.91854 0.91404 0.90490 0.92421 0.87706 0.92113 0.92755 0.89556 0.91776 0.95689 0.93330 0.93016 0.83440 0.81943 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.15 37.16 0.34 -2.35 16 2 C -0.16 -2.33 3.75 -26.73 -0.10 -2.43 16 3 C 0.17 2.78 0.73 -131.82 -0.10 2.68 16 4 C -0.21 -2.84 7.33 37.16 0.27 -2.57 16 5 C -0.15 -2.42 6.58 37.15 0.24 -2.17 16 6 N -0.59 -12.43 1.78 -161.53 -0.29 -12.72 16 7 C 0.25 6.20 4.46 -5.20 -0.02 6.18 16 8 C -0.51 -13.95 8.23 -34.44 -0.28 -14.23 16 9 H 0.07 1.90 5.20 -52.49 -0.27 1.63 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 12 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.57 12.44 6.53 -12.63 -0.08 12.36 16 17 O -0.52 -13.46 16.91 5.24 0.09 -13.37 16 18 C -0.18 -3.12 4.49 -104.63 -0.47 -3.59 16 19 C -0.08 -1.17 10.29 -39.02 -0.40 -1.57 16 20 C -0.25 -2.96 11.12 28.86 0.32 -2.64 16 21 S 0.13 1.39 23.02 -107.50 -2.48 -1.08 16 22 C -0.21 -2.90 4.95 29.93 0.15 -2.75 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.79 4.82 -51.93 -0.25 1.54 16 25 H 0.06 1.10 6.24 -51.93 -0.32 0.77 16 26 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.08 1.16 4.78 -51.92 -0.25 0.91 16 28 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.11 1.56 3.41 -93.61 -0.32 1.24 16 30 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.63 5.68 -51.93 -0.30 1.33 16 33 H 0.06 1.09 6.93 -51.93 -0.36 0.73 16 34 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.05 1.22 5.48 -51.93 -0.28 0.94 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.22 2.81 1.69 -53.28 -0.09 2.72 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -31.39 304.33 -7.45 -38.84 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.85 Total: 3.91 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.23 Total: -11.58 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.45 Total: -38.23 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.48 Total: -1.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.39 -7.45 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187510640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.494 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds