Wall clock time and date at job start Tue Mar 31 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47363 * 180.95340 * 3 2 1 5 5 C 1.52994 * 109.47362 * 300.95599 * 3 2 1 6 6 N 1.46504 * 109.47386 * 60.95582 * 3 2 1 7 7 C 1.46491 * 120.00179 * 240.35954 * 6 3 2 8 8 C 1.50703 * 109.47306 * 96.38101 * 7 6 3 9 9 H 1.07993 * 119.99839 * 4.48447 * 8 7 6 10 10 C 1.37879 * 120.00084 * 184.47897 * 8 7 6 11 11 N 1.31512 * 119.99896 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47470 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47117 * 120.00170 * 12 10 8 15 15 H 1.48509 * 109.46622 * 239.99595 * 12 10 8 16 16 C 1.34779 * 119.99965 * 60.35601 * 6 3 2 17 17 O 1.21638 * 119.99973 * 207.45362 * 16 6 3 18 18 C 1.47185 * 119.99905 * 27.45128 * 16 6 3 19 19 C 1.44431 * 123.46183 * 143.69864 * 18 16 6 20 20 C 1.32771 * 113.08521 * 179.80466 * 19 18 16 21 21 S 1.75511 * 110.57427 * 0.44767 * 20 19 18 22 22 C 1.36015 * 123.46329 * 323.99363 * 18 16 6 23 23 H 1.08999 * 109.47283 * 176.81889 * 1 2 3 24 24 H 1.09002 * 109.47206 * 296.81933 * 1 2 3 25 25 H 1.08997 * 109.46392 * 56.81855 * 1 2 3 26 26 H 1.08997 * 109.47011 * 239.99656 * 2 1 3 27 27 H 1.09008 * 109.46654 * 120.00060 * 2 1 3 28 28 H 1.08999 * 109.47223 * 145.12771 * 4 3 2 29 29 H 1.09001 * 109.47570 * 265.13402 * 4 3 2 30 30 H 1.09001 * 109.46946 * 25.12924 * 4 3 2 31 31 H 1.09000 * 109.46833 * 300.00269 * 5 3 2 32 32 H 1.09005 * 109.47318 * 59.99539 * 5 3 2 33 33 H 1.08995 * 109.47660 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47460 * 216.38529 * 7 6 3 35 35 H 1.09001 * 109.47212 * 336.38393 * 7 6 3 36 36 H 0.97000 * 120.00522 * 179.97438 * 11 10 8 37 37 H 1.07998 * 123.45245 * 0.02562 * 19 18 16 38 38 H 1.07992 * 124.71391 * 180.17781 * 20 19 18 39 39 H 1.07997 * 124.59217 * 0.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5699 1.4424 -0.0240 5 6 1.5106 2.1706 -1.2370 6 7 1.5707 2.1264 1.2075 7 6 0.7202 3.3136 1.0931 8 6 -0.7256 2.9109 1.2300 9 1 -0.9816 1.8869 1.4585 10 6 -1.7215 3.8498 1.0635 11 7 -1.4097 5.0969 0.7858 12 14 -3.5135 3.3507 1.2338 13 1 -3.5962 1.9016 1.5472 14 1 -4.1428 4.1313 2.3292 15 1 -4.2262 3.6226 -0.0404 16 6 1.9214 1.6634 2.4237 17 8 1.1984 1.8614 3.3816 18 6 3.1793 0.9180 2.5928 19 6 4.0164 1.0241 3.7650 20 6 5.0994 0.2585 3.7023 21 16 5.1449 -0.6224 2.1849 22 6 3.6758 0.0631 1.6587 23 1 -0.3634 -1.0261 -0.0570 24 1 -0.3634 0.4637 0.9171 25 1 -0.3632 0.5624 -0.8601 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.9241 2.2888 -0.6125 29 1 3.9494 1.5239 0.9946 30 1 3.9263 0.5145 -0.4712 31 1 1.8599 1.6617 -2.1354 32 1 0.4207 2.1706 -1.2199 33 1 1.8743 3.1981 -1.2372 34 1 0.9763 4.0215 1.8814 35 1 0.8768 3.7804 0.1207 36 1 -2.1103 5.7574 0.6683 37 1 3.7833 1.6581 4.6076 38 1 5.8503 0.1908 4.4754 39 1 3.2035 -0.1518 0.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187510640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:43 Heat of formation + Delta-G solvation = 62.144827 kcal Electronic energy + Delta-G solvation = -21458.857129 eV Core-core repulsion = 18496.230408 eV Total energy + Delta-G solvation = -2962.626720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22151 -38.53123 -37.99290 -35.22226 -33.57880 -32.35217 -31.01722 -29.21802 -27.71980 -25.86925 -24.74515 -24.06879 -22.62487 -21.06275 -19.01922 -18.83204 -18.32515 -17.34295 -16.87893 -16.37638 -16.04452 -15.84709 -15.44741 -15.24566 -14.75028 -14.36957 -14.23470 -13.96041 -13.56926 -13.41090 -13.09030 -12.99580 -12.88868 -12.74538 -12.56995 -12.34897 -12.24997 -12.08992 -12.02567 -11.93513 -11.79922 -11.23612 -10.98779 -10.66728 -10.51830 -9.40005 -9.35782 -9.06208 -8.14586 -6.23947 -0.03613 0.70414 0.99316 1.16332 1.33168 1.36515 1.47768 2.18114 2.33426 2.50153 3.13965 3.71099 3.75452 3.86047 4.04024 4.11667 4.38192 4.39269 4.50478 4.59959 4.68269 4.79835 4.81710 4.88471 4.94654 4.99109 5.08275 5.12499 5.15727 5.21716 5.25289 5.36972 5.40107 5.49614 5.61603 5.83265 5.99291 6.18410 6.82333 6.89560 7.33955 7.50121 8.91644 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.006025 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.178554 B = 4646.538492 C = 5022.036555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.153 4.153 3 C 0.158 3.842 4 C -0.204 4.204 5 C -0.145 4.145 6 N -0.596 5.596 7 C 0.262 3.738 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.952 3.048 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.270 1.270 16 C 0.567 3.433 17 O -0.585 6.585 18 C -0.221 4.221 19 C -0.111 4.111 20 C -0.238 4.238 21 S 0.231 5.769 22 C -0.205 4.205 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.057 0.943 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.047 0.953 34 H -0.024 1.024 35 H 0.048 0.952 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.194 0.806 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.049 -13.968 -4.507 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.074 3.926 4 C -0.260 4.260 5 C -0.202 4.202 6 N -0.328 5.328 7 C 0.142 3.858 8 C -0.551 4.551 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.573 5.573 12 Si 0.778 3.222 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.195 1.195 16 C 0.355 3.645 17 O -0.466 6.466 18 C -0.237 4.237 19 C -0.140 4.140 20 C -0.372 4.372 21 S 0.495 5.505 22 C -0.341 4.341 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.135 0.865 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.066 0.934 34 H -0.006 1.006 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.212 0.788 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 16.599 -14.697 -4.679 22.659 hybrid contribution -2.668 1.849 1.229 3.470 sum 13.932 -12.848 -3.451 19.263 Atomic orbital electron populations 1.21905 0.96095 1.00959 1.02187 1.22574 0.97001 0.95376 1.04083 1.20778 0.94440 0.92556 0.84841 1.23774 0.93767 1.03771 1.04724 1.22102 1.01903 0.99764 0.96409 1.48009 1.50315 1.29593 1.04898 1.18862 0.88874 0.82142 0.95955 1.21850 0.91918 0.95652 1.45686 0.92281 1.25693 1.03015 0.94906 0.95465 1.70038 1.34088 1.02678 1.50513 0.85595 0.80588 0.78164 0.77865 1.19789 1.21222 1.19487 1.18228 0.84943 0.78463 0.82833 1.90709 1.54139 1.59195 1.42577 1.20263 0.98944 1.06096 0.98417 1.21061 0.94448 1.01314 0.97216 1.25677 1.03427 1.04100 1.04003 1.82666 1.16008 1.42355 1.09457 1.27932 1.02994 0.98426 1.04775 0.91935 0.94757 0.92446 0.86464 0.90269 0.91821 0.88718 0.87795 0.88414 0.92782 0.93364 1.00636 0.93460 0.92821 0.85198 0.78850 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.15 71.98 0.66 -4.60 16 2 C -0.15 -4.14 3.75 30.59 0.11 -4.03 16 3 C 0.16 5.00 0.73 3.60 0.00 5.00 16 4 C -0.20 -4.88 7.33 71.98 0.53 -4.35 16 5 C -0.14 -4.60 6.58 71.98 0.47 -4.12 16 6 N -0.60 -26.18 1.78 -783.19 -1.40 -27.57 16 7 C 0.26 14.26 4.46 85.64 0.38 14.64 16 8 C -0.51 -29.84 8.23 25.60 0.21 -29.63 16 9 H 0.06 3.52 5.20 -2.91 -0.02 3.50 16 10 C 0.01 0.40 5.46 84.66 0.46 0.86 16 11 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 12 Si 0.95 46.67 29.54 68.60 2.03 48.70 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 C 0.57 26.05 6.53 86.59 0.57 26.62 16 17 O -0.59 -33.25 16.91 -4.15 -0.07 -33.32 16 18 C -0.22 -7.52 4.49 -19.87 -0.09 -7.61 16 19 C -0.11 -3.35 10.29 22.67 0.23 -3.12 16 20 C -0.24 -4.91 11.12 66.64 0.74 -4.17 16 21 S 0.23 3.84 23.02 -56.49 -1.30 2.54 16 22 C -0.20 -4.96 4.95 67.30 0.33 -4.63 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.03 1.51 4.82 -2.39 -0.01 1.50 16 25 H 0.06 1.98 6.24 -2.39 -0.01 1.97 16 26 H 0.12 2.09 8.10 -2.39 -0.02 2.07 16 27 H 0.08 2.16 4.78 -2.38 -0.01 2.15 16 28 H 0.06 1.48 7.75 -2.39 -0.02 1.46 16 29 H 0.10 2.58 3.41 -41.54 -0.14 2.44 16 30 H 0.10 1.61 6.56 -2.39 -0.02 1.59 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.07 5.68 -2.38 -0.01 2.06 16 33 H 0.05 1.66 6.93 -2.39 -0.02 1.64 16 34 H -0.02 -1.53 8.06 -2.39 -0.02 -1.55 16 35 H 0.05 2.55 5.48 -2.39 -0.01 2.54 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.23 4.86 1.69 -3.66 -0.01 4.86 16 Total: -1.00 -76.63 304.33 5.11 -71.52 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.95 Total: 13.75 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.62 Total: -19.13 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.11 Total: -84.05 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.07 Total: -33.32 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.30 Total: 2.54 kcal Total: -76.63 5.11 -71.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187510640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.664 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds