Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.52997 * 109.47299 * 303.10035 * 3 2 1 5 5 C 1.52992 * 109.47321 * 183.09520 * 3 2 1 6 6 N 1.46500 * 109.46892 * 63.09426 * 3 2 1 7 7 C 1.46503 * 120.00232 * 244.02755 * 6 3 2 8 8 C 1.50691 * 109.47174 * 262.76687 * 7 6 3 9 9 H 1.08002 * 120.00447 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99891 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00142 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99972 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47051 * 89.99677 * 12 10 8 14 14 H 1.48494 * 109.47159 * 209.99593 * 12 10 8 15 15 H 1.48496 * 109.47002 * 329.99634 * 12 10 8 16 16 C 1.34786 * 119.99786 * 64.02938 * 6 3 2 17 17 O 1.21692 * 119.99811 * 1.86059 * 16 6 3 18 18 C 1.46581 * 119.99903 * 181.85671 * 16 6 3 19 19 C 1.36650 * 125.45877 * 171.72548 * 18 16 6 20 20 C 1.37472 * 113.29801 * 179.97438 * 19 18 16 21 21 C 1.33819 * 115.09986 * 0.02562 * 20 19 18 22 22 S 1.70614 * 110.95573 * 359.97438 * 21 20 19 23 23 H 1.09011 * 109.46656 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47029 * 299.99168 * 1 2 3 25 25 H 1.08998 * 109.47693 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.47253 * 240.00545 * 2 1 3 27 27 H 1.08998 * 109.47693 * 119.99708 * 2 1 3 28 28 H 1.08997 * 109.47533 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.46680 * 299.99265 * 4 3 2 30 30 H 1.09000 * 109.47440 * 59.99361 * 4 3 2 31 31 H 1.09008 * 109.47091 * 305.44016 * 5 3 2 32 32 H 1.09000 * 109.47532 * 65.43914 * 5 3 2 33 33 H 1.09006 * 109.47289 * 185.44088 * 5 3 2 34 34 H 1.08992 * 109.46768 * 22.76849 * 7 6 3 35 35 H 1.09005 * 109.46743 * 142.76735 * 7 6 3 36 36 H 0.96998 * 120.00261 * 180.02562 * 11 10 8 37 37 H 1.07999 * 123.34590 * 0.25799 * 19 18 16 38 38 H 1.07994 * 122.44895 * 180.02562 * 20 19 18 39 39 H 1.08004 * 124.52034 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4672 2.1860 -1.2084 5 6 3.5679 1.4434 -0.0779 6 7 1.6133 2.1112 1.2317 7 6 0.6947 3.2506 1.1664 8 6 1.4816 4.5344 1.2249 9 1 2.5583 4.5047 1.3035 10 6 0.8269 5.7469 1.1793 11 7 -0.4843 5.7832 1.0842 12 14 1.8024 7.3384 1.2527 13 1 2.1623 7.7623 -0.1243 14 1 0.9798 8.3939 1.8964 15 1 3.0404 7.1241 2.0441 16 6 2.0661 1.6782 2.4251 17 8 2.8556 0.7536 2.4773 18 6 1.6077 2.3211 3.6601 19 6 1.8640 1.8777 4.9270 20 6 1.3130 2.6733 5.9033 21 6 0.6283 3.7316 5.4539 22 16 0.6401 3.7866 3.7487 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.8308 3.2135 -1.2087 29 1 1.7846 1.6885 -2.1248 30 1 0.3786 2.1854 -1.1529 31 1 3.9731 0.8327 0.7290 32 1 3.8830 1.0333 -1.0374 33 1 3.9361 2.4647 0.0193 34 1 0.1328 3.2111 0.2333 35 1 0.0039 3.2090 2.0086 36 1 -0.9449 6.6362 1.0518 37 1 2.4457 0.9931 5.1400 38 1 1.4245 2.4598 6.9561 39 1 0.1349 4.4549 6.0863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187522966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = -3.658039 kcal Electronic energy + Delta-G solvation = -21337.325070 eV Core-core repulsion = 18371.844924 eV Total energy + Delta-G solvation = -2965.480147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71179 -37.11057 -35.82314 -34.01791 -32.15356 -30.08116 -28.57656 -27.90157 -26.39844 -24.23062 -23.28909 -22.58475 -21.14939 -18.43676 -18.20425 -16.91526 -16.59489 -15.60613 -14.99937 -14.70615 -14.58046 -14.29586 -13.98199 -13.29753 -12.86959 -12.72132 -12.49079 -12.28943 -12.06301 -11.84420 -11.76303 -11.60721 -11.41507 -11.21943 -11.18898 -11.11383 -10.77696 -10.65480 -10.37911 -10.28639 -10.08782 -9.81061 -9.11849 -8.93174 -8.69882 -8.09577 -7.72631 -7.47958 -6.35603 -4.37390 1.41823 2.59920 3.04227 3.15277 3.17145 3.22644 3.27620 3.86205 4.07221 4.22704 4.98003 5.20038 5.40277 5.51263 5.65557 5.71376 5.75813 5.97847 6.02502 6.07342 6.16742 6.18749 6.20470 6.28086 6.41878 6.47011 6.58886 6.64457 6.66768 6.69014 6.86748 6.92806 7.00100 7.05918 7.14734 7.51884 7.62755 7.80902 8.29045 8.64965 9.04074 9.23156 10.68207 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.010208 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.882751 B = 2742.333486 C = 4073.623132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.182 3.818 4 C -0.152 4.152 5 C -0.161 4.161 6 N -0.585 5.585 7 C 0.220 3.780 8 C -0.532 4.532 9 H 0.068 0.932 10 C 0.076 3.924 11 N -0.877 5.877 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.592 3.408 17 O -0.563 6.563 18 C -0.290 4.290 19 C -0.088 4.088 20 C -0.168 4.168 21 C -0.339 4.339 22 S 0.399 5.601 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.269 0.731 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 -4.661 0.051 4.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.097 3.903 4 C -0.209 4.209 5 C -0.219 4.219 6 N -0.315 5.315 7 C 0.097 3.903 8 C -0.574 4.574 9 H 0.086 0.914 10 C -0.130 4.130 11 N -0.514 5.514 12 Si 0.714 3.286 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.193 1.193 16 C 0.381 3.619 17 O -0.446 6.446 18 C -0.412 4.412 19 C -0.122 4.122 20 C -0.199 4.199 21 C -0.477 4.477 22 S 0.675 5.325 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.334 -3.975 -0.955 4.102 hybrid contribution 1.012 0.206 1.379 1.723 sum 0.678 -3.769 0.424 3.853 Atomic orbital electron populations 1.21783 0.96071 1.00605 1.02173 1.21921 0.95987 0.96628 1.02544 1.20196 0.94205 0.91375 0.84473 1.22165 1.01614 1.01674 0.95454 1.22222 0.95084 1.02718 1.01849 1.48134 1.46628 1.32493 1.04293 1.19789 0.89003 0.82771 0.98709 1.21507 0.94462 0.90102 1.51312 0.91406 1.24886 0.94908 0.99068 0.94132 1.69901 1.06948 1.26906 1.47629 0.86616 0.80462 0.82740 0.78748 1.20220 1.20740 1.19335 1.16960 0.80422 0.82106 0.82391 1.90626 1.35972 1.30818 1.87216 1.24817 1.13824 1.05203 0.97338 1.20400 1.00775 1.00621 0.90453 1.19644 1.03705 0.96937 0.99629 1.26697 1.07628 1.03637 1.09698 1.85995 1.39977 1.16237 0.90300 0.93601 0.92605 0.92589 0.92011 0.90490 0.90474 0.92705 0.91572 0.90315 0.93058 0.92496 0.92015 0.94412 0.92072 0.84829 0.86444 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.35 37.16 0.35 -1.95 16 2 C -0.13 -2.17 4.89 -26.73 -0.13 -2.30 16 3 C 0.18 3.28 0.73 -131.82 -0.10 3.18 16 4 C -0.15 -2.53 6.79 37.16 0.25 -2.28 16 5 C -0.16 -2.85 8.22 37.15 0.31 -2.54 16 6 N -0.59 -12.05 1.80 -161.75 -0.29 -12.34 16 7 C 0.22 4.82 4.10 -5.20 -0.02 4.80 16 8 C -0.53 -12.54 6.63 -34.44 -0.23 -12.77 16 9 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.08 1.80 5.03 -17.82 -0.09 1.71 16 11 N -0.88 -21.44 13.29 55.43 0.74 -20.70 16 12 Si 0.89 19.19 29.54 -169.99 -5.02 14.17 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.59 12.99 6.97 -12.89 -0.09 12.90 16 17 O -0.56 -12.92 13.13 5.20 0.07 -12.85 16 18 C -0.29 -6.16 6.23 -36.79 -0.23 -6.39 16 19 C -0.09 -1.71 10.02 -40.43 -0.41 -2.11 16 20 C -0.17 -2.99 10.15 -41.41 -0.42 -3.41 16 21 C -0.34 -6.16 10.92 29.18 0.32 -5.85 16 22 S 0.40 8.19 15.89 -107.50 -1.71 6.48 16 23 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.05 0.96 7.69 -51.93 -0.40 0.56 16 25 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.42 6.46 -51.93 -0.34 1.08 16 28 H 0.08 1.43 7.56 -51.93 -0.39 1.04 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.11 4.99 -51.93 -0.26 0.85 16 31 H 0.08 1.52 6.03 -51.92 -0.31 1.21 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.38 5.50 -51.93 -0.29 1.10 16 35 H 0.04 0.88 4.48 -22.30 -0.10 0.78 16 36 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -25.32 315.09 -7.30 -32.61 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.34 Total: 4.87 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.49 Total: -17.00 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.45 Total: -33.04 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -1.71 Total: 6.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.32 -7.30 -32.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.955 kcal (2) G-P(sol) polarization free energy of solvation -25.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds