Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47520 * 2 1 4 4 C 1.52998 * 109.47101 * 120.00126 * 2 1 3 5 5 C 1.52999 * 109.47453 * 64.99884 * 4 2 1 6 6 N 1.46496 * 109.47544 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00439 * 270.00122 * 6 5 4 8 8 C 1.50705 * 109.47051 * 274.99196 * 7 6 5 9 9 H 1.07995 * 119.99680 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99869 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99951 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47021 * 90.00316 * 12 10 8 14 14 H 1.48504 * 109.47151 * 210.00135 * 12 10 8 15 15 H 1.48498 * 109.47110 * 330.00177 * 12 10 8 16 16 C 1.34776 * 119.99661 * 89.99822 * 6 5 4 17 17 O 1.21638 * 120.00327 * 3.71837 * 16 6 5 18 18 C 1.47196 * 119.99960 * 183.71581 * 16 6 5 19 19 C 1.44423 * 123.45949 * 144.06946 * 18 16 6 20 20 C 1.32773 * 113.08395 * 179.97438 * 19 18 16 21 21 S 1.75508 * 110.57409 * 359.77429 * 20 19 18 22 22 C 1.36011 * 123.46137 * 324.04864 * 18 16 6 23 23 H 1.09004 * 109.47510 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46781 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47392 * 59.99981 * 1 2 3 26 26 H 1.08998 * 109.47146 * 239.99721 * 2 1 3 27 27 H 1.08995 * 109.47322 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46763 * 300.00576 * 3 2 1 29 29 H 1.08998 * 109.47139 * 59.99717 * 3 2 1 30 30 H 1.08997 * 109.47300 * 304.99375 * 4 2 1 31 31 H 1.09005 * 109.46976 * 184.99347 * 4 2 1 32 32 H 1.09006 * 109.47081 * 59.99569 * 5 4 2 33 33 H 1.09004 * 109.47119 * 300.00250 * 5 4 2 34 34 H 1.09003 * 109.46643 * 34.98647 * 7 6 5 35 35 H 1.08999 * 109.47499 * 154.98616 * 7 6 5 36 36 H 0.96997 * 119.99715 * 179.97438 * 11 10 8 37 37 H 1.08005 * 123.46110 * 359.97438 * 19 18 16 38 38 H 1.07996 * 124.71269 * 180.02562 * 20 19 18 39 39 H 1.07997 * 124.58751 * 359.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 3.4523 -3.5043 2.3813 8 6 3.3606 -4.8896 1.7951 9 1 2.4082 -5.2715 1.4585 10 6 4.4928 -5.6693 1.6885 11 7 5.6525 -5.2043 2.0989 12 14 4.3790 -7.3868 0.9626 13 1 4.5894 -7.3184 -0.5058 14 1 5.4209 -8.2518 1.5721 15 1 3.0365 -7.9554 1.2444 16 6 1.3518 -2.9531 3.4863 17 8 0.2233 -2.4995 3.4669 18 6 1.8739 -3.5751 4.7140 19 6 1.5595 -3.1024 6.0420 20 6 2.1407 -3.8152 6.9995 21 16 3.1011 -5.1109 6.3072 22 6 2.7017 -4.6543 4.7143 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6055 -0.2617 2.1369 31 1 3.1263 -0.6444 1.2950 32 1 2.0698 -2.6550 0.3002 33 1 0.5489 -2.2724 1.1421 34 1 4.1329 -2.9002 1.7813 35 1 3.8262 -3.5661 3.4033 36 1 6.4489 -5.7530 2.0242 37 1 0.9174 -2.2560 6.2363 38 1 2.0339 -3.6267 8.0575 39 1 3.0541 -5.1569 3.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264071018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = -20.729950 kcal Electronic energy + Delta-G solvation = -20256.265278 eV Core-core repulsion = 17290.044838 eV Total energy + Delta-G solvation = -2966.220440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.38777 -36.80219 -35.92302 -34.81781 -32.69753 -30.09660 -28.32048 -27.22646 -26.98832 -24.40004 -23.23324 -22.58631 -20.02689 -19.66606 -18.17732 -16.92188 -16.63773 -16.10621 -15.28353 -14.94988 -14.60951 -14.46809 -13.64542 -13.49316 -13.32586 -12.85476 -12.51262 -12.44066 -12.31552 -12.17438 -12.03480 -11.78170 -11.56860 -11.14479 -11.07601 -10.96550 -10.70233 -10.61700 -10.57744 -10.46396 -10.26703 -10.02325 -9.80505 -9.05433 -8.74467 -8.30776 -7.90863 -7.66253 -6.31865 -4.41561 1.53331 2.14458 2.52001 2.68770 3.14638 3.22892 3.26283 3.83750 4.05564 4.26687 4.97451 5.07198 5.14902 5.16694 5.36281 5.58389 5.74593 5.77879 5.82807 5.86008 5.92490 6.01848 6.04871 6.14621 6.26374 6.28882 6.36187 6.39220 6.42139 6.65204 6.70857 6.76413 6.84254 6.92370 7.16909 7.54148 7.64934 7.93807 8.33732 8.69664 9.04062 9.26512 10.72316 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.007092 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.209868 B = 3947.436673 C = 5742.361107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.589 5.589 7 C 0.224 3.776 8 C -0.545 4.545 9 H 0.065 0.935 10 C 0.068 3.932 11 N -0.880 5.880 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.579 3.421 17 O -0.573 6.573 18 C -0.175 4.175 19 C -0.085 4.085 20 C -0.258 4.258 21 S 0.140 5.860 22 C -0.175 4.175 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 5.374 2.512 6.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.317 5.317 7 C 0.104 3.896 8 C -0.584 4.584 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.516 5.516 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.366 3.634 17 O -0.455 6.455 18 C -0.191 4.191 19 C -0.115 4.115 20 C -0.392 4.392 21 S 0.404 5.596 22 C -0.312 4.312 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.124 4.425 3.131 6.256 hybrid contribution -0.643 0.172 -1.077 1.266 sum -3.767 4.597 2.053 6.288 Atomic orbital electron populations 1.21875 0.95359 1.02090 1.01106 1.21046 0.95831 0.95891 0.98508 1.21820 1.00900 0.96215 1.01251 1.21993 1.01077 0.95951 0.97587 1.21359 0.99930 0.90949 0.88077 1.48056 1.19131 1.53047 1.11515 1.19795 0.77957 0.92612 0.99245 1.21533 0.94946 0.99630 1.42255 0.91703 1.25007 0.95031 0.98794 0.94890 1.69934 0.99022 1.37527 1.45144 0.86562 0.78285 0.83579 0.79657 1.20234 1.20771 1.19487 1.17633 0.84512 0.78364 0.82884 1.90670 1.19130 1.50895 1.84786 1.20189 1.04580 1.00248 0.94034 1.21051 0.99873 1.00466 0.90134 1.25294 1.07731 1.03273 1.02898 1.82939 1.48156 1.30971 0.97523 1.27366 0.98942 1.00706 1.04201 0.92234 0.92786 0.93315 0.91175 0.92781 0.93079 0.92921 0.92056 0.91834 0.90478 0.90696 0.94794 0.93028 0.92172 0.84109 0.82357 0.76571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 4 C -0.13 -2.08 5.01 -26.73 -0.13 -2.22 16 5 C 0.12 2.27 5.21 -4.04 -0.02 2.25 16 6 N -0.59 -12.76 2.46 -176.41 -0.43 -13.19 16 7 C 0.22 5.26 4.67 -5.19 -0.02 5.24 16 8 C -0.55 -13.57 7.02 -34.44 -0.24 -13.81 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.07 1.70 5.34 -17.82 -0.10 1.60 16 11 N -0.88 -22.95 13.29 55.43 0.74 -22.21 16 12 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 C 0.58 12.97 7.50 -12.62 -0.09 12.88 16 17 O -0.57 -13.68 16.56 5.24 0.09 -13.60 16 18 C -0.17 -3.62 5.39 -104.63 -0.56 -4.19 16 19 C -0.08 -1.50 10.29 -39.02 -0.40 -1.90 16 20 C -0.26 -3.96 11.12 28.86 0.32 -3.64 16 21 S 0.14 2.31 23.02 -107.50 -2.48 -0.16 16 22 C -0.18 -3.59 8.37 29.93 0.25 -3.34 16 23 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.07 1.43 5.80 -51.93 -0.30 1.13 16 34 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.05 1.26 5.00 -51.93 -0.26 1.00 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.22 4.98 4.09 -52.49 -0.21 4.77 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -27.24 332.16 -8.42 -35.66 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.73 Total: 5.43 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.59 Total: -11.55 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.30 Total: -35.41 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.48 Total: -0.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.24 -8.42 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264071018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.935 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds