Wall clock time and date at job start Tue Mar 31 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47520 * 2 1 4 4 C 1.52998 * 109.47101 * 120.00126 * 2 1 3 5 5 C 1.52999 * 109.47453 * 64.99884 * 4 2 1 6 6 N 1.46496 * 109.47544 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00439 * 270.00122 * 6 5 4 8 8 C 1.50705 * 109.47051 * 274.99196 * 7 6 5 9 9 H 1.07995 * 119.99680 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99869 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99951 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47021 * 90.00316 * 12 10 8 14 14 H 1.48504 * 109.47151 * 210.00135 * 12 10 8 15 15 H 1.48498 * 109.47110 * 330.00177 * 12 10 8 16 16 C 1.34776 * 119.99661 * 89.99822 * 6 5 4 17 17 O 1.21638 * 120.00327 * 3.71837 * 16 6 5 18 18 C 1.47196 * 119.99960 * 183.71581 * 16 6 5 19 19 C 1.44423 * 123.45949 * 144.06946 * 18 16 6 20 20 C 1.32773 * 113.08395 * 179.97438 * 19 18 16 21 21 S 1.75508 * 110.57409 * 359.77429 * 20 19 18 22 22 C 1.36011 * 123.46137 * 324.04864 * 18 16 6 23 23 H 1.09004 * 109.47510 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46781 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47392 * 59.99981 * 1 2 3 26 26 H 1.08998 * 109.47146 * 239.99721 * 2 1 3 27 27 H 1.08995 * 109.47322 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46763 * 300.00576 * 3 2 1 29 29 H 1.08998 * 109.47139 * 59.99717 * 3 2 1 30 30 H 1.08997 * 109.47300 * 304.99375 * 4 2 1 31 31 H 1.09005 * 109.46976 * 184.99347 * 4 2 1 32 32 H 1.09006 * 109.47081 * 59.99569 * 5 4 2 33 33 H 1.09004 * 109.47119 * 300.00250 * 5 4 2 34 34 H 1.09003 * 109.46643 * 34.98647 * 7 6 5 35 35 H 1.08999 * 109.47499 * 154.98616 * 7 6 5 36 36 H 0.96997 * 119.99715 * 179.97438 * 11 10 8 37 37 H 1.08005 * 123.46110 * 359.97438 * 19 18 16 38 38 H 1.07996 * 124.71269 * 180.02562 * 20 19 18 39 39 H 1.07997 * 124.58751 * 359.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 3.4523 -3.5043 2.3813 8 6 3.3606 -4.8896 1.7951 9 1 2.4082 -5.2715 1.4585 10 6 4.4928 -5.6693 1.6885 11 7 5.6525 -5.2043 2.0989 12 14 4.3790 -7.3868 0.9626 13 1 4.5894 -7.3184 -0.5058 14 1 5.4209 -8.2518 1.5721 15 1 3.0365 -7.9554 1.2444 16 6 1.3518 -2.9531 3.4863 17 8 0.2233 -2.4995 3.4669 18 6 1.8739 -3.5751 4.7140 19 6 1.5595 -3.1024 6.0420 20 6 2.1407 -3.8152 6.9995 21 16 3.1011 -5.1109 6.3072 22 6 2.7017 -4.6543 4.7143 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6055 -0.2617 2.1369 31 1 3.1263 -0.6444 1.2950 32 1 2.0698 -2.6550 0.3002 33 1 0.5489 -2.2724 1.1421 34 1 4.1329 -2.9002 1.7813 35 1 3.8262 -3.5661 3.4033 36 1 6.4489 -5.7530 2.0242 37 1 0.9174 -2.2560 6.2363 38 1 2.0339 -3.6267 8.0575 39 1 3.0541 -5.1569 3.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264071018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:46 Heat of formation + Delta-G solvation = -33.867603 kcal Electronic energy + Delta-G solvation = -20256.834969 eV Core-core repulsion = 17290.044838 eV Total energy + Delta-G solvation = -2966.790132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.07649 -38.13517 -37.45874 -36.46152 -34.56624 -31.55580 -29.80083 -29.03587 -28.01477 -25.93310 -25.02997 -24.08134 -21.46157 -20.89513 -19.78041 -18.60440 -18.41994 -17.75584 -16.91100 -16.35146 -16.22388 -16.05986 -15.11256 -14.74637 -14.60800 -14.43402 -14.23278 -14.09456 -13.75147 -13.58584 -13.23560 -13.14871 -12.93953 -12.81570 -12.74974 -12.44363 -12.26999 -12.07500 -11.96766 -11.90971 -11.60433 -11.54847 -11.43761 -10.80498 -10.64234 -9.74597 -9.54091 -9.21609 -8.25882 -6.41837 0.05001 0.78137 1.09062 1.22127 1.38446 1.42138 1.50726 2.18788 2.29531 2.50168 3.01599 3.80229 3.94806 4.00141 4.06327 4.17880 4.36403 4.48522 4.54643 4.66772 4.75266 4.79560 4.80521 4.88704 4.94666 5.00813 5.01567 5.10913 5.13031 5.19256 5.30731 5.37546 5.40914 5.46298 5.49803 5.62835 5.83218 5.99357 6.50827 6.75704 7.22876 7.34689 8.78111 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.007092 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.209868 B = 3947.436673 C = 5742.361107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.592 5.592 7 C 0.242 3.758 8 C -0.550 4.550 9 H 0.052 0.948 10 C 0.033 3.967 11 N -0.905 5.905 12 Si 0.948 3.052 13 H -0.274 1.274 14 H -0.275 1.275 15 H -0.272 1.272 16 C 0.570 3.430 17 O -0.595 6.595 18 C -0.193 4.193 19 C -0.108 4.108 20 C -0.229 4.229 21 S 0.192 5.808 22 C -0.210 4.210 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.044 0.956 36 H 0.272 0.728 37 H 0.152 0.848 38 H 0.203 0.797 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 5.373 3.348 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.320 5.320 7 C 0.121 3.879 8 C -0.588 4.588 9 H 0.070 0.930 10 C -0.170 4.170 11 N -0.543 5.543 12 Si 0.773 3.227 13 H -0.199 1.199 14 H -0.200 1.200 15 H -0.196 1.196 16 C 0.358 3.642 17 O -0.479 6.479 18 C -0.210 4.210 19 C -0.137 4.137 20 C -0.363 4.363 21 S 0.457 5.543 22 C -0.347 4.347 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.220 0.780 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.164 4.428 3.957 6.729 hybrid contribution -0.627 0.154 -1.270 1.424 sum -3.791 4.582 2.688 6.526 Atomic orbital electron populations 1.21847 0.94802 1.01505 1.01983 1.21050 0.96269 0.96829 0.96839 1.21786 1.00919 0.94833 1.02256 1.21884 1.00448 0.94302 0.98822 1.21509 0.99575 0.92408 0.87066 1.48128 1.18515 1.53032 1.12343 1.19465 0.78405 0.91874 0.98189 1.21544 0.94513 1.00317 1.42407 0.93023 1.25587 0.94613 1.01729 0.95041 1.70007 0.99533 1.38767 1.45978 0.85693 0.78164 0.79840 0.78969 1.19930 1.19986 1.19633 1.18038 0.84320 0.78180 0.83614 1.90634 1.19883 1.52104 1.85291 1.20354 1.05215 1.00718 0.94670 1.21130 1.01573 1.01888 0.89111 1.25782 1.04886 1.01115 1.04531 1.82679 1.47059 1.30413 0.94194 1.27086 1.00145 1.01433 1.06084 0.93559 0.93359 0.90953 0.90663 0.92769 0.91037 0.92951 0.93333 0.92621 0.90721 0.91093 0.96609 0.93867 0.91896 0.83028 0.77976 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.95 71.98 0.64 -2.96 16 2 C -0.09 -2.38 2.92 -10.80 -0.03 -2.41 16 3 C -0.14 -3.08 9.19 71.98 0.66 -2.42 16 4 C -0.12 -3.88 5.01 30.59 0.15 -3.73 16 5 C 0.12 4.58 5.21 86.38 0.45 5.03 16 6 N -0.59 -26.71 2.46 -830.28 -2.04 -28.75 16 7 C 0.24 11.79 4.67 85.63 0.40 12.19 16 8 C -0.55 -28.13 7.02 25.60 0.18 -27.95 16 9 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 10 C 0.03 1.67 5.34 84.65 0.45 2.12 16 11 N -0.91 -47.71 13.29 21.45 0.28 -47.43 16 12 Si 0.95 40.39 29.54 68.60 2.03 42.42 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 C 0.57 26.36 7.50 86.60 0.65 27.01 16 17 O -0.59 -29.20 16.56 -4.15 -0.07 -29.27 16 18 C -0.19 -8.07 5.39 -19.87 -0.11 -8.18 16 19 C -0.11 -3.67 10.29 22.67 0.23 -3.44 16 20 C -0.23 -6.30 11.12 66.64 0.74 -5.56 16 21 S 0.19 5.96 23.02 -56.49 -1.30 4.66 16 22 C -0.21 -8.67 8.37 67.30 0.56 -8.11 16 23 H 0.05 1.26 6.56 -2.39 -0.02 1.25 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.07 2.91 8.07 -2.38 -0.02 2.89 16 33 H 0.07 2.83 5.80 -2.39 -0.01 2.81 16 34 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 35 H 0.04 2.20 5.00 -2.39 -0.01 2.19 16 36 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.19 8.99 4.09 -2.91 -0.01 8.98 16 Total: -1.00 -59.35 332.16 4.92 -54.43 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.03 Total: 22.35 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 4.99 Total: -18.41 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.75 Total: -76.18 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.07 Total: -29.27 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.30 Total: 4.66 kcal Total: -59.35 4.92 -54.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264071018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.561 kcal (2) G-P(sol) polarization free energy of solvation -59.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds