Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 C 1.53001 * 109.47330 * 120.00440 * 2 1 3 5 5 C 1.52997 * 109.47107 * 64.99708 * 4 2 1 6 6 N 1.46497 * 109.47146 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00025 * 270.00213 * 6 5 4 8 8 C 1.50698 * 109.47294 * 262.22599 * 7 6 5 9 9 H 1.08000 * 120.00115 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00322 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99567 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47156 * 89.99664 * 12 10 8 14 14 H 1.48495 * 109.47297 * 209.99455 * 12 10 8 15 15 H 1.48497 * 109.46978 * 329.99891 * 12 10 8 16 16 C 1.34769 * 119.99923 * 89.99997 * 6 5 4 17 17 O 1.21703 * 120.00276 * 1.94585 * 16 6 5 18 18 C 1.46589 * 120.00047 * 181.94388 * 16 6 5 19 19 C 1.36651 * 125.46005 * 172.14685 * 18 16 6 20 20 C 1.37463 * 113.29809 * 180.02562 * 19 18 16 21 21 C 1.33822 * 115.10375 * 359.97438 * 20 19 18 22 22 S 1.70622 * 110.95164 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47082 * 59.99681 * 1 2 3 24 24 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46687 * 299.99504 * 1 2 3 26 26 H 1.09004 * 109.46905 * 240.00538 * 2 1 3 27 27 H 1.09004 * 109.47234 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47385 * 300.00133 * 3 2 1 29 29 H 1.09004 * 109.46773 * 60.00457 * 3 2 1 30 30 H 1.08997 * 109.46726 * 304.99950 * 4 2 1 31 31 H 1.09000 * 109.46977 * 185.00083 * 4 2 1 32 32 H 1.09009 * 109.46926 * 60.00123 * 5 4 2 33 33 H 1.08994 * 109.47697 * 300.00427 * 5 4 2 34 34 H 1.09006 * 109.47528 * 22.22801 * 7 6 5 35 35 H 1.09000 * 109.47474 * 142.22338 * 7 6 5 36 36 H 0.97001 * 119.99764 * 180.02562 * 11 10 8 37 37 H 1.08004 * 123.34668 * 0.26353 * 19 18 16 38 38 H 1.07998 * 122.45114 * 180.02562 * 20 19 18 39 39 H 1.07996 * 124.52155 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 7 2.1231 -2.8861 2.3842 7 6 3.4514 -3.5041 2.3828 8 6 3.3194 -4.9779 2.0973 9 1 2.3437 -5.4108 1.9329 10 6 4.4442 -5.7736 2.0460 11 7 5.6324 -5.2463 2.2457 12 14 4.2807 -7.6004 1.6914 13 1 4.3555 -7.8288 0.2259 14 1 5.3817 -8.3357 2.3638 15 1 2.9747 -8.0888 2.2024 16 6 1.3500 -2.9527 3.4861 17 8 0.2328 -2.4702 3.4757 18 6 1.8548 -3.6065 4.6971 19 6 1.2350 -3.6065 5.9150 20 6 1.9303 -4.2973 6.8789 21 6 3.0795 -4.8454 6.4668 22 16 3.3549 -4.5161 4.8155 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6055 -0.2619 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 2.0699 -2.6550 0.3000 33 1 0.5490 -2.2725 1.1419 34 1 4.0679 -3.0388 1.6136 35 1 3.9187 -3.3632 3.3574 36 1 6.4237 -5.8061 2.2093 37 1 0.2909 -3.1159 6.1007 38 1 1.5747 -4.3916 7.8942 39 1 3.7439 -5.4195 7.0956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264085372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -21.275003 kcal Electronic energy + Delta-G solvation = -20308.236162 eV Core-core repulsion = 17341.992086 eV Total energy + Delta-G solvation = -2966.244076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.17395 -36.97015 -36.20416 -34.84141 -32.77225 -30.07769 -28.32058 -27.17072 -27.00803 -24.43911 -23.31390 -22.57401 -19.93434 -19.58948 -18.23051 -17.20716 -16.63925 -15.64903 -15.16606 -14.87390 -14.58934 -14.55227 -13.98471 -13.56024 -13.31523 -12.77427 -12.53919 -12.41077 -12.25475 -12.14491 -11.98177 -11.89557 -11.56723 -11.34729 -11.13818 -11.03487 -10.85232 -10.73633 -10.51201 -10.33337 -10.09500 -9.91067 -9.21825 -9.15509 -8.78617 -8.13306 -7.77618 -7.50972 -6.38256 -4.40769 1.40033 2.58474 3.03018 3.14190 3.16096 3.21931 3.26899 3.88000 4.03442 4.21585 4.95924 5.04542 5.11844 5.13475 5.42697 5.68385 5.72079 5.73117 5.81814 5.88773 5.97584 6.00038 6.04732 6.11544 6.19356 6.25571 6.31364 6.38129 6.53036 6.60274 6.67474 6.70090 6.91422 6.97833 7.13259 7.41735 7.58537 7.76305 8.21153 8.60592 8.97605 9.20004 10.65834 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.006949 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.624794 B = 4028.129659 C = 5393.692429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.121 3.879 6 N -0.597 5.597 7 C 0.227 3.773 8 C -0.537 4.537 9 H 0.069 0.931 10 C 0.076 3.924 11 N -0.877 5.877 12 Si 0.891 3.109 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.590 3.410 17 O -0.567 6.567 18 C -0.291 4.291 19 C -0.087 4.087 20 C -0.168 4.168 21 C -0.337 4.337 22 S 0.400 5.600 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.270 0.730 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 5.640 -0.020 6.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.104 3.896 8 C -0.579 4.579 9 H 0.087 0.913 10 C -0.130 4.130 11 N -0.513 5.513 12 Si 0.717 3.283 13 H -0.202 1.202 14 H -0.206 1.206 15 H -0.193 1.193 16 C 0.379 3.621 17 O -0.450 6.450 18 C -0.413 4.413 19 C -0.121 4.121 20 C -0.199 4.199 21 C -0.475 4.475 22 S 0.676 5.324 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.763 5.440 -0.964 5.799 hybrid contribution -0.994 -0.842 1.046 1.671 sum -2.757 4.598 0.082 5.361 Atomic orbital electron populations 1.21879 0.95324 1.02103 1.01172 1.21049 0.95873 0.95922 0.98410 1.21823 1.00894 0.96191 1.01308 1.22018 1.01086 0.95887 0.97782 1.21385 1.00177 0.90993 0.87624 1.48033 1.18859 1.53753 1.11988 1.19671 0.78583 0.93595 0.97750 1.21527 0.94264 0.92584 1.49531 0.91282 1.24908 0.94861 0.99174 0.94101 1.69908 0.97961 1.36513 1.46953 0.86567 0.78496 0.84301 0.78928 1.20151 1.20637 1.19258 1.17029 0.84296 0.78488 0.82247 1.90689 1.19794 1.50297 1.84201 1.24760 1.05112 1.12954 0.98476 1.20410 1.00401 1.00236 0.91077 1.19642 0.96592 1.03544 1.00129 1.26700 1.03251 1.08296 1.09290 1.85985 1.13500 1.39086 0.93837 0.93293 0.92238 0.92726 0.91181 0.92771 0.93055 0.92880 0.91863 0.91799 0.90526 0.90472 0.92953 0.94128 0.91988 0.84782 0.86367 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 2 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.20 5.14 -4.05 -0.02 2.18 16 6 N -0.60 -12.69 2.48 -176.64 -0.44 -13.13 16 7 C 0.23 5.11 4.74 -5.20 -0.02 5.09 16 8 C -0.54 -12.97 6.94 -34.44 -0.24 -13.21 16 9 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 10 C 0.08 1.82 5.01 -17.82 -0.09 1.73 16 11 N -0.88 -21.70 13.29 55.43 0.74 -20.97 16 12 Si 0.89 19.28 29.54 -169.99 -5.02 14.26 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 16 C 0.59 13.34 7.56 -12.90 -0.10 13.24 16 17 O -0.57 -13.61 16.42 5.19 0.09 -13.53 16 18 C -0.29 -6.27 6.23 -36.79 -0.23 -6.50 16 19 C -0.09 -1.69 10.02 -40.44 -0.41 -2.10 16 20 C -0.17 -2.99 10.15 -41.41 -0.42 -3.41 16 21 C -0.34 -6.14 10.92 29.18 0.32 -5.82 16 22 S 0.40 8.27 15.85 -107.50 -1.70 6.56 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.34 8.07 -51.92 -0.42 0.92 16 33 H 0.08 1.43 5.82 -51.93 -0.30 1.13 16 34 H 0.05 1.21 8.01 -51.93 -0.42 0.80 16 35 H 0.04 0.96 4.50 -22.36 -0.10 0.86 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 37 H 0.13 2.47 8.06 -52.48 -0.42 2.05 16 38 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.15 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -26.29 330.09 -8.07 -34.36 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.77 Total: 2.68 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.93 Total: -15.22 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.30 Total: -34.09 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 8.27 SS G_CDS: -1.70 Total: 6.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.29 -8.07 -34.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.084 kcal (2) G-P(sol) polarization free energy of solvation -26.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds